miRNA display CGI


Results 41 - 60 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32575 5' -48.4 NC_007151.1 + 77065 0.7 0.99066
Target:  5'- -cCGACaGCGAUGACGACAGcagCGGc -3'
miRNA:   3'- cuGCUGcUGCUGCUGCUGUUuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 54840 0.7 0.99066
Target:  5'- -cCGuCGGCGACGAUGGCAccgccuucgcAGUCGAa -3'
miRNA:   3'- cuGCuGCUGCUGCUGCUGUu---------UUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 94131 0.7 0.99066
Target:  5'- -cCGGCGGucuUGGCGAUGGCGAucUCGAg -3'
miRNA:   3'- cuGCUGCU---GCUGCUGCUGUUuuAGCU- -5'
32575 5' -48.4 NC_007151.1 + 48947 0.7 0.989335
Target:  5'- cACGAUGGuCGAUGACGACGGccAAUUGu -3'
miRNA:   3'- cUGCUGCU-GCUGCUGCUGUU--UUAGCu -5'
32575 5' -48.4 NC_007151.1 + 77202 0.7 0.989335
Target:  5'- --aGACGAaGACGACGACGAAGa--- -3'
miRNA:   3'- cugCUGCUgCUGCUGCUGUUUUagcu -5'
32575 5' -48.4 NC_007151.1 + 55067 0.7 0.987868
Target:  5'- uGCGGCGGCGGCGGUGuCGAcGUCGu -3'
miRNA:   3'- cUGCUGCUGCUGCUGCuGUUuUAGCu -5'
32575 5' -48.4 NC_007151.1 + 62591 0.7 0.98625
Target:  5'- cGCGaucaGCGcCGGCGAUGACAAAAUUGc -3'
miRNA:   3'- cUGC----UGCuGCUGCUGCUGUUUUAGCu -5'
32575 5' -48.4 NC_007151.1 + 1235 0.7 0.98625
Target:  5'- gGGCGGCGGUGGCGGUGGCGguggcggugGAAUCGAa -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGU---------UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 93979 0.7 0.98625
Target:  5'- -cCGGCGACGA-GACGACAuucuUUGAu -3'
miRNA:   3'- cuGCUGCUGCUgCUGCUGUuuu-AGCU- -5'
32575 5' -48.4 NC_007151.1 + 123270 0.7 0.98625
Target:  5'- uACGuCGACGACGuCGACuucaaucAUCGAg -3'
miRNA:   3'- cUGCuGCUGCUGCuGCUGuuu----UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 107582 0.71 0.98447
Target:  5'- -uCGGCaACGuCGACGACAAcGUCGGc -3'
miRNA:   3'- cuGCUGcUGCuGCUGCUGUUuUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 3198 0.72 0.972853
Target:  5'- uGACaGCGAUGACGACGucCAGAuuGUUGAg -3'
miRNA:   3'- -CUGcUGCUGCUGCUGCu-GUUU--UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 45880 0.72 0.969926
Target:  5'- cGCGACGGCucGCGAgUGGCAAAAUCGu -3'
miRNA:   3'- cUGCUGCUGc-UGCU-GCUGUUUUAGCu -5'
32575 5' -48.4 NC_007151.1 + 58744 0.72 0.969926
Target:  5'- aACGACGGCGGCG-CGA----GUCGAg -3'
miRNA:   3'- cUGCUGCUGCUGCuGCUguuuUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 1877 0.72 0.969926
Target:  5'- cAUGACGAcucugucucCGAUGACGGCAuugccaAAGUCGAg -3'
miRNA:   3'- cUGCUGCU---------GCUGCUGCUGU------UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 4680 0.72 0.966781
Target:  5'- --gGGCGGCGGCGAUGGCGuccAUCGc -3'
miRNA:   3'- cugCUGCUGCUGCUGCUGUuu-UAGCu -5'
32575 5' -48.4 NC_007151.1 + 134138 0.72 0.966781
Target:  5'- cGACuACGGCGGCGcCGACAGAAccgcCGAu -3'
miRNA:   3'- -CUGcUGCUGCUGCuGCUGUUUUa---GCU- -5'
32575 5' -48.4 NC_007151.1 + 47875 0.72 0.963411
Target:  5'- cGCGG-GACGAuCGugGAUGGAGUCGAc -3'
miRNA:   3'- cUGCUgCUGCU-GCugCUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 69927 0.72 0.963411
Target:  5'- cGACGACGGaGAUGACGuguuUAAAAUCGu -3'
miRNA:   3'- -CUGCUGCUgCUGCUGCu---GUUUUAGCu -5'
32575 5' -48.4 NC_007151.1 + 29187 0.72 0.963411
Target:  5'- aACGGCGGCGACaaaggcaACGACuaucGAGUCGAu -3'
miRNA:   3'- cUGCUGCUGCUGc------UGCUGu---UUUAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.