miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32790 5' -58.3 NC_007346.1 + 255633 0.66 0.967587
Target:  5'- uUCUcCGCGAgagaCCCGacgagaucgggcaGCUCGGUCuCGUCa -3'
miRNA:   3'- -AGA-GCGCU----GGGUg------------CGAGCCAGcGUAG- -5'
32790 5' -58.3 NC_007346.1 + 259192 0.66 0.956161
Target:  5'- gCUCGCGACaCCAUGCU-GaUUGCGUa -3'
miRNA:   3'- aGAGCGCUG-GGUGCGAgCcAGCGUAg -5'
32790 5' -58.3 NC_007346.1 + 272446 0.67 0.95402
Target:  5'- --aCGCGACgCCguguuuuccauggauGCGCUgaCGGUgCGCAUCg -3'
miRNA:   3'- agaGCGCUG-GG---------------UGCGA--GCCA-GCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 342385 0.67 0.948753
Target:  5'- aUUCGCGugCUGCGaaUCGGUCG-GUCg -3'
miRNA:   3'- aGAGCGCugGGUGCg-AGCCAGCgUAG- -5'
32790 5' -58.3 NC_007346.1 + 244286 0.68 0.926764
Target:  5'- aCUauaaGCGAacCCCGCaCUCGGUCaCAUCa -3'
miRNA:   3'- aGAg---CGCU--GGGUGcGAGCCAGcGUAG- -5'
32790 5' -58.3 NC_007346.1 + 87696 0.68 0.916555
Target:  5'- aCUCGCuuUUCGCGCUCGaGUCG-AUCa -3'
miRNA:   3'- aGAGCGcuGGGUGCGAGC-CAGCgUAG- -5'
32790 5' -58.3 NC_007346.1 + 86437 0.68 0.916555
Target:  5'- gUUCGCGGugagcgcaUCACGCUCGGcCGCcUCg -3'
miRNA:   3'- aGAGCGCUg-------GGUGCGAGCCaGCGuAG- -5'
32790 5' -58.3 NC_007346.1 + 249460 0.68 0.916555
Target:  5'- aUCUCGCGAUCguaaaAUGCUCGGagaugaaaaguaUCGCGg- -3'
miRNA:   3'- -AGAGCGCUGGg----UGCGAGCC------------AGCGUag -5'
32790 5' -58.3 NC_007346.1 + 298145 0.68 0.907807
Target:  5'- gUCUUGCGucauuuaagaauucCCCugGCUUGGUUGUGUa -3'
miRNA:   3'- -AGAGCGCu-------------GGGugCGAGCCAGCGUAg -5'
32790 5' -58.3 NC_007346.1 + 264590 0.7 0.838278
Target:  5'- cCUUGCGAgauUCCaaGCGCUCGGgaaugagucugugUCGCGUCu -3'
miRNA:   3'- aGAGCGCU---GGG--UGCGAGCC-------------AGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 251548 0.71 0.807705
Target:  5'- aUUCaaaCGAgCCACGUUCGGaCGCAUCa -3'
miRNA:   3'- aGAGc--GCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 273141 0.71 0.774226
Target:  5'- aUCUCuCGACCCGUGUaCGGUCGCGa- -3'
miRNA:   3'- -AGAGcGCUGGGUGCGaGCCAGCGUag -5'
32790 5' -58.3 NC_007346.1 + 274169 0.72 0.747963
Target:  5'- aUCUCGCG-CUCGCGUUCuugcguccugguGGUCGCAg- -3'
miRNA:   3'- -AGAGCGCuGGGUGCGAG------------CCAGCGUag -5'
32790 5' -58.3 NC_007346.1 + 260695 0.73 0.693307
Target:  5'- aUCcCGCGAgCCACaCUCGGacgCGCGUCg -3'
miRNA:   3'- -AGaGCGCUgGGUGcGAGCCa--GCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 274979 0.75 0.590075
Target:  5'- cCUCGCGguGCCCAUGCUgcccGUCGCGUCc -3'
miRNA:   3'- aGAGCGC--UGGGUGCGAgc--CAGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 246371 0.76 0.534564
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCAc- -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUag -5'
32790 5' -58.3 NC_007346.1 + 260081 0.76 0.51645
Target:  5'- aUCUCuCGAgCCACGCUCGaaCGCAUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCcaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 263080 0.79 0.398123
Target:  5'- aUCUauCGAgCCACGCUCGGaCGCAUCa -3'
miRNA:   3'- -AGAgcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 242998 0.83 0.240133
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCGUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 269417 0.83 0.224547
Target:  5'- aUCUCGCGACCCGuuCaCGGUCGCAUCa -3'
miRNA:   3'- -AGAGCGCUGGGUgcGaGCCAGCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.