miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32795 5' -44.6 NC_007346.1 + 187284 0.66 1
Target:  5'- gGUGGCgGAGcCAcugcgggagguguuGGUGCAuuUGCACa -3'
miRNA:   3'- -CAUUGgCUUuGU--------------UCACGUuuACGUGc -5'
32795 5' -44.6 NC_007346.1 + 371314 0.66 1
Target:  5'- -cGACCGGuuCGucuGUGCGAA-GUACGu -3'
miRNA:   3'- caUUGGCUuuGUu--CACGUUUaCGUGC- -5'
32795 5' -44.6 NC_007346.1 + 300544 0.66 1
Target:  5'- aUGACUGcAACAAGUGCuagaauGAggGCACc -3'
miRNA:   3'- cAUUGGCuUUGUUCACG------UUuaCGUGc -5'
32795 5' -44.6 NC_007346.1 + 164929 0.66 1
Target:  5'- -cAGCCGGuuuauuuACAAuuuGUGUAGAUGUugGg -3'
miRNA:   3'- caUUGGCUu------UGUU---CACGUUUACGugC- -5'
32795 5' -44.6 NC_007346.1 + 368542 0.66 1
Target:  5'- cUAACCGuauuGCAAGUGUGAccuacgccauucAUGUACu -3'
miRNA:   3'- cAUUGGCuu--UGUUCACGUU------------UACGUGc -5'
32795 5' -44.6 NC_007346.1 + 186823 0.66 1
Target:  5'- -cAAUCGuacCAucguGUGCAAAUGCACc -3'
miRNA:   3'- caUUGGCuuuGUu---CACGUUUACGUGc -5'
32795 5' -44.6 NC_007346.1 + 97966 0.66 1
Target:  5'- --cGCCGAAAUAucgaAGcGCGGAUGC-CGg -3'
miRNA:   3'- cauUGGCUUUGU----UCaCGUUUACGuGC- -5'
32795 5' -44.6 NC_007346.1 + 223884 0.66 1
Target:  5'- -aAAUCGuauuGGCAAGUGCcgccAAGUGCAUu -3'
miRNA:   3'- caUUGGCu---UUGUUCACG----UUUACGUGc -5'
32795 5' -44.6 NC_007346.1 + 380761 0.66 1
Target:  5'- -gAGgUGAAGCAAGUGaGGAUGCAa- -3'
miRNA:   3'- caUUgGCUUUGUUCACgUUUACGUgc -5'
32795 5' -44.6 NC_007346.1 + 296497 0.67 1
Target:  5'- -cAACCGAuguuGGUGCAAagGCAUu -3'
miRNA:   3'- caUUGGCUuuguUCACGUUuaCGUGc -5'
32795 5' -44.6 NC_007346.1 + 199334 0.67 1
Target:  5'- cGUGGCCGAAAUGauuucGGUGCGgacAAUGUAa- -3'
miRNA:   3'- -CAUUGGCUUUGU-----UCACGU---UUACGUgc -5'
32795 5' -44.6 NC_007346.1 + 95420 0.67 1
Target:  5'- -aGACUGAAACAuuguGUGCA-AUGUAUu -3'
miRNA:   3'- caUUGGCUUUGUu---CACGUuUACGUGc -5'
32795 5' -44.6 NC_007346.1 + 169152 0.67 1
Target:  5'- cGUAACCGguAUGA--GCGAAUGCAUa -3'
miRNA:   3'- -CAUUGGCuuUGUUcaCGUUUACGUGc -5'
32795 5' -44.6 NC_007346.1 + 337435 0.67 1
Target:  5'- -aAACCGAuGCGAuGUGCAAGUaGCuCa -3'
miRNA:   3'- caUUGGCUuUGUU-CACGUUUA-CGuGc -5'
32795 5' -44.6 NC_007346.1 + 87273 0.67 1
Target:  5'- -gAGCgCGAAaaGCGAGUGCuucugGUACGa -3'
miRNA:   3'- caUUG-GCUU--UGUUCACGuuua-CGUGC- -5'
32795 5' -44.6 NC_007346.1 + 104288 0.67 1
Target:  5'- -aAAgCGuacauGCAGGUGUAGAUGUACu -3'
miRNA:   3'- caUUgGCuu---UGUUCACGUUUACGUGc -5'
32795 5' -44.6 NC_007346.1 + 384740 0.67 1
Target:  5'- -aAACCGAcuCAc-UGCAAGUGCAaCGg -3'
miRNA:   3'- caUUGGCUuuGUucACGUUUACGU-GC- -5'
32795 5' -44.6 NC_007346.1 + 99080 0.67 1
Target:  5'- uUAAUCGAAGCGAaUGCAGAgauuguUGCAUu -3'
miRNA:   3'- cAUUGGCUUUGUUcACGUUU------ACGUGc -5'
32795 5' -44.6 NC_007346.1 + 255259 0.67 1
Target:  5'- --cACCGAGACGc-UGCAAcaGCACGu -3'
miRNA:   3'- cauUGGCUUUGUucACGUUuaCGUGC- -5'
32795 5' -44.6 NC_007346.1 + 3320 0.67 1
Target:  5'- ---uCCGAGACAgAGUacucuGCAAAUGUugGu -3'
miRNA:   3'- cauuGGCUUUGU-UCA-----CGUUUACGugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.