miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32795 5' -44.6 NC_007346.1 + 3320 0.67 1
Target:  5'- ---uCCGAGACAgAGUacucuGCAAAUGUugGu -3'
miRNA:   3'- cauuGGCUUUGU-UCA-----CGUUUACGugC- -5'
32795 5' -44.6 NC_007346.1 + 22817 0.69 1
Target:  5'- uUGAUUGAAu--GGUGCGAAUcGCGCGg -3'
miRNA:   3'- cAUUGGCUUuguUCACGUUUA-CGUGC- -5'
32795 5' -44.6 NC_007346.1 + 31667 0.69 1
Target:  5'- -aGAUUGAAcauuACAAGUgGCAAAUGCAUu -3'
miRNA:   3'- caUUGGCUU----UGUUCA-CGUUUACGUGc -5'
32795 5' -44.6 NC_007346.1 + 45239 0.69 1
Target:  5'- uGUGAUaCGAugcGACAuGUGCAAAUGCAa- -3'
miRNA:   3'- -CAUUG-GCU---UUGUuCACGUUUACGUgc -5'
32795 5' -44.6 NC_007346.1 + 50356 0.69 1
Target:  5'- aUGACCGAAAUGAGaugggGCuug-GCACGc -3'
miRNA:   3'- cAUUGGCUUUGUUCa----CGuuuaCGUGC- -5'
32795 5' -44.6 NC_007346.1 + 55911 0.76 0.998587
Target:  5'- -cGACCGcuuguauuuuGAGCAGGUGCAuuuGGUGCACc -3'
miRNA:   3'- caUUGGC----------UUUGUUCACGU---UUACGUGc -5'
32795 5' -44.6 NC_007346.1 + 56365 0.7 0.999997
Target:  5'- --uGCCGcAugGGGUGCAccaAAUGCACc -3'
miRNA:   3'- cauUGGCuUugUUCACGU---UUACGUGc -5'
32795 5' -44.6 NC_007346.1 + 57819 0.73 0.999926
Target:  5'- cUAGCUGAAuauACAAGUGUGAAUGaACGg -3'
miRNA:   3'- cAUUGGCUU---UGUUCACGUUUACgUGC- -5'
32795 5' -44.6 NC_007346.1 + 67858 0.69 1
Target:  5'- -gAAUUGAuauGCAAGUGCGGGUGUAa- -3'
miRNA:   3'- caUUGGCUu--UGUUCACGUUUACGUgc -5'
32795 5' -44.6 NC_007346.1 + 69753 0.69 1
Target:  5'- uGUGACgugGAAAC-AGUGCAAAUGcCAUGu -3'
miRNA:   3'- -CAUUGg--CUUUGuUCACGUUUAC-GUGC- -5'
32795 5' -44.6 NC_007346.1 + 87273 0.67 1
Target:  5'- -gAGCgCGAAaaGCGAGUGCuucugGUACGa -3'
miRNA:   3'- caUUG-GCUU--UGUUCACGuuua-CGUGC- -5'
32795 5' -44.6 NC_007346.1 + 90292 0.7 0.999999
Target:  5'- aUAAgUGAAACAAGUGUguuguuAAAUGCAaCGg -3'
miRNA:   3'- cAUUgGCUUUGUUCACG------UUUACGU-GC- -5'
32795 5' -44.6 NC_007346.1 + 95420 0.67 1
Target:  5'- -aGACUGAAACAuuguGUGCA-AUGUAUu -3'
miRNA:   3'- caUUGGCUUUGUu---CACGUuUACGUGc -5'
32795 5' -44.6 NC_007346.1 + 97966 0.66 1
Target:  5'- --cGCCGAAAUAucgaAGcGCGGAUGC-CGg -3'
miRNA:   3'- cauUGGCUUUGU----UCaCGUUUACGuGC- -5'
32795 5' -44.6 NC_007346.1 + 99080 0.67 1
Target:  5'- uUAAUCGAAGCGAaUGCAGAgauuguUGCAUu -3'
miRNA:   3'- cAUUGGCUUUGUUcACGUUU------ACGUGc -5'
32795 5' -44.6 NC_007346.1 + 101841 0.71 0.999995
Target:  5'- uUAugUGAAAUuguGGUGCAAGUGCGu- -3'
miRNA:   3'- cAUugGCUUUGu--UCACGUUUACGUgc -5'
32795 5' -44.6 NC_007346.1 + 104288 0.67 1
Target:  5'- -aAAgCGuacauGCAGGUGUAGAUGUACu -3'
miRNA:   3'- caUUgGCuu---UGUUCACGUUUACGUGc -5'
32795 5' -44.6 NC_007346.1 + 127026 0.68 1
Target:  5'- -aAAUCGguACuuguAGUGCuAGGUGCACGc -3'
miRNA:   3'- caUUGGCuuUGu---UCACG-UUUACGUGC- -5'
32795 5' -44.6 NC_007346.1 + 141072 0.69 0.999999
Target:  5'- ----gCGAAaguccuGC-AGUGCGAAUGCGCGg -3'
miRNA:   3'- cauugGCUU------UGuUCACGUUUACGUGC- -5'
32795 5' -44.6 NC_007346.1 + 157262 0.75 0.999039
Target:  5'- -aGAUCGuccuuGGCAAGUGCGGAUGCcucGCGg -3'
miRNA:   3'- caUUGGCu----UUGUUCACGUUUACG---UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.