miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32795 5' -44.6 NC_007346.1 + 263624 1.1 0.082126
Target:  5'- gGUAACCGAAACAAGUGCAAAUGCACGc -3'
miRNA:   3'- -CAUUGGCUUUGUUCACGUUUACGUGC- -5'
32795 5' -44.6 NC_007346.1 + 280035 0.78 0.990525
Target:  5'- --cGCgCGAAACGGGUGCAAcUGCACc -3'
miRNA:   3'- cauUG-GCUUUGUUCACGUUuACGUGc -5'
32795 5' -44.6 NC_007346.1 + 55911 0.76 0.998587
Target:  5'- -cGACCGcuuguauuuuGAGCAGGUGCAuuuGGUGCACc -3'
miRNA:   3'- caUUGGC----------UUUGUUCACGU---UUACGUGc -5'
32795 5' -44.6 NC_007346.1 + 157262 0.75 0.999039
Target:  5'- -aGAUCGuccuuGGCAAGUGCGGAUGCcucGCGg -3'
miRNA:   3'- caUUGGCu----UUGUUCACGUUUACG---UGC- -5'
32795 5' -44.6 NC_007346.1 + 302696 0.73 0.999793
Target:  5'- uUAACCGAuc--AGUGCAucUGCGCGa -3'
miRNA:   3'- cAUUGGCUuuguUCACGUuuACGUGC- -5'
32795 5' -44.6 NC_007346.1 + 270512 0.73 0.999874
Target:  5'- cGUGACUGuguGCAAGUGCAAAgaaaaugaauUGCAUu -3'
miRNA:   3'- -CAUUGGCuu-UGUUCACGUUU----------ACGUGc -5'
32795 5' -44.6 NC_007346.1 + 57819 0.73 0.999926
Target:  5'- cUAGCUGAAuauACAAGUGUGAAUGaACGg -3'
miRNA:   3'- cAUUGGCUU---UGUUCACGUUUACgUGC- -5'
32795 5' -44.6 NC_007346.1 + 339116 0.72 0.999968
Target:  5'- uGUcACCGucAACAAGUGCAAGguuaGCACc -3'
miRNA:   3'- -CAuUGGCu-UUGUUCACGUUUa---CGUGc -5'
32795 5' -44.6 NC_007346.1 + 161097 0.71 0.999983
Target:  5'- -gAGCCauGACAAGUGCAAuacuUGCAUa -3'
miRNA:   3'- caUUGGcuUUGUUCACGUUu---ACGUGc -5'
32795 5' -44.6 NC_007346.1 + 275042 0.71 0.999987
Target:  5'- uGUuAUCGAGGCAAGUGCucGUGCu-- -3'
miRNA:   3'- -CAuUGGCUUUGUUCACGuuUACGugc -5'
32795 5' -44.6 NC_007346.1 + 101841 0.71 0.999995
Target:  5'- uUAugUGAAAUuguGGUGCAAGUGCGu- -3'
miRNA:   3'- cAUugGCUUUGu--UCACGUUUACGUgc -5'
32795 5' -44.6 NC_007346.1 + 56365 0.7 0.999997
Target:  5'- --uGCCGcAugGGGUGCAccaAAUGCACc -3'
miRNA:   3'- cauUGGCuUugUUCACGU---UUACGUGc -5'
32795 5' -44.6 NC_007346.1 + 207249 0.7 0.999998
Target:  5'- -gGACCaGggGCAccgGGUGCAuucAAUGUugGg -3'
miRNA:   3'- caUUGG-CuuUGU---UCACGU---UUACGugC- -5'
32795 5' -44.6 NC_007346.1 + 189881 0.7 0.999998
Target:  5'- -cGAUCGAAAUAGGUGCAAAUaC-CGa -3'
miRNA:   3'- caUUGGCUUUGUUCACGUUUAcGuGC- -5'
32795 5' -44.6 NC_007346.1 + 90292 0.7 0.999999
Target:  5'- aUAAgUGAAACAAGUGUguuguuAAAUGCAaCGg -3'
miRNA:   3'- cAUUgGCUUUGUUCACG------UUUACGU-GC- -5'
32795 5' -44.6 NC_007346.1 + 141072 0.69 0.999999
Target:  5'- ----gCGAAaguccuGC-AGUGCGAAUGCGCGg -3'
miRNA:   3'- cauugGCUU------UGuUCACGUUUACGUGC- -5'
32795 5' -44.6 NC_007346.1 + 258335 0.7 0.999999
Target:  5'- -aGACgGAAGacGG-GCAGAUGCGCGg -3'
miRNA:   3'- caUUGgCUUUguUCaCGUUUACGUGC- -5'
32795 5' -44.6 NC_007346.1 + 368542 0.66 1
Target:  5'- cUAACCGuauuGCAAGUGUGAccuacgccauucAUGUACu -3'
miRNA:   3'- cAUUGGCuu--UGUUCACGUU------------UACGUGc -5'
32795 5' -44.6 NC_007346.1 + 365222 0.69 1
Target:  5'- uGUAugUGAua-AAGUGCGAggGCACc -3'
miRNA:   3'- -CAUugGCUuugUUCACGUUuaCGUGc -5'
32795 5' -44.6 NC_007346.1 + 157323 0.69 1
Target:  5'- --uGCCGAAaucgaucGCAAG-GCAuAUGCugGg -3'
miRNA:   3'- cauUGGCUU-------UGUUCaCGUuUACGugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.