miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32795 5' -44.6 NC_007346.1 + 280035 0.78 0.990525
Target:  5'- --cGCgCGAAACGGGUGCAAcUGCACc -3'
miRNA:   3'- cauUG-GCUUUGUUCACGUUuACGUGc -5'
32795 5' -44.6 NC_007346.1 + 199334 0.67 1
Target:  5'- cGUGGCCGAAAUGauuucGGUGCGgacAAUGUAa- -3'
miRNA:   3'- -CAUUGGCUUUGU-----UCACGU---UUACGUgc -5'
32795 5' -44.6 NC_007346.1 + 346522 0.67 1
Target:  5'- cGUAACagcguuuGAAGCGGGUGUAAagGUugGu -3'
miRNA:   3'- -CAUUGg------CUUUGUUCACGUUuaCGugC- -5'
32795 5' -44.6 NC_007346.1 + 368542 0.66 1
Target:  5'- cUAACCGuauuGCAAGUGUGAccuacgccauucAUGUACu -3'
miRNA:   3'- cAUUGGCuu--UGUUCACGUU------------UACGUGc -5'
32795 5' -44.6 NC_007346.1 + 161097 0.71 0.999983
Target:  5'- -gAGCCauGACAAGUGCAAuacuUGCAUa -3'
miRNA:   3'- caUUGGcuUUGUUCACGUUu---ACGUGc -5'
32795 5' -44.6 NC_007346.1 + 275042 0.71 0.999987
Target:  5'- uGUuAUCGAGGCAAGUGCucGUGCu-- -3'
miRNA:   3'- -CAuUGGCUUUGUUCACGuuUACGugc -5'
32795 5' -44.6 NC_007346.1 + 90292 0.7 0.999999
Target:  5'- aUAAgUGAAACAAGUGUguuguuAAAUGCAaCGg -3'
miRNA:   3'- cAUUgGCUUUGUUCACG------UUUACGU-GC- -5'
32795 5' -44.6 NC_007346.1 + 67858 0.69 1
Target:  5'- -gAAUUGAuauGCAAGUGCGGGUGUAa- -3'
miRNA:   3'- caUUGGCUu--UGUUCACGUUUACGUgc -5'
32795 5' -44.6 NC_007346.1 + 213428 0.68 1
Target:  5'- -cAACCGucGCAAGUGCGcgauugaAGUGCuuGa -3'
miRNA:   3'- caUUGGCuuUGUUCACGU-------UUACGugC- -5'
32795 5' -44.6 NC_007346.1 + 169152 0.67 1
Target:  5'- cGUAACCGguAUGA--GCGAAUGCAUa -3'
miRNA:   3'- -CAUUGGCuuUGUUcaCGUUUACGUGc -5'
32795 5' -44.6 NC_007346.1 + 283577 0.68 1
Target:  5'- gGUGAgCGucGCAAG-GCAAAUGCGg- -3'
miRNA:   3'- -CAUUgGCuuUGUUCaCGUUUACGUgc -5'
32795 5' -44.6 NC_007346.1 + 50356 0.69 1
Target:  5'- aUGACCGAAAUGAGaugggGCuug-GCACGc -3'
miRNA:   3'- cAUUGGCUUUGUUCa----CGuuuaCGUGC- -5'
32795 5' -44.6 NC_007346.1 + 55911 0.76 0.998587
Target:  5'- -cGACCGcuuguauuuuGAGCAGGUGCAuuuGGUGCACc -3'
miRNA:   3'- caUUGGC----------UUUGUUCACGU---UUACGUGc -5'
32795 5' -44.6 NC_007346.1 + 127026 0.68 1
Target:  5'- -aAAUCGguACuuguAGUGCuAGGUGCACGc -3'
miRNA:   3'- caUUGGCuuUGu---UCACG-UUUACGUGC- -5'
32795 5' -44.6 NC_007346.1 + 157262 0.75 0.999039
Target:  5'- -aGAUCGuccuuGGCAAGUGCGGAUGCcucGCGg -3'
miRNA:   3'- caUUGGCu----UUGUUCACGUUUACG---UGC- -5'
32795 5' -44.6 NC_007346.1 + 31667 0.69 1
Target:  5'- -aGAUUGAAcauuACAAGUgGCAAAUGCAUu -3'
miRNA:   3'- caUUGGCUU----UGUUCA-CGUUUACGUGc -5'
32795 5' -44.6 NC_007346.1 + 328039 0.68 1
Target:  5'- cGUGACCaugcaaGggGCAAGUacagGCAcuAUGCACa -3'
miRNA:   3'- -CAUUGG------CuuUGUUCA----CGUu-UACGUGc -5'
32795 5' -44.6 NC_007346.1 + 337435 0.67 1
Target:  5'- -aAACCGAuGCGAuGUGCAAGUaGCuCa -3'
miRNA:   3'- caUUGGCUuUGUU-CACGUUUA-CGuGc -5'
32795 5' -44.6 NC_007346.1 + 57819 0.73 0.999926
Target:  5'- cUAGCUGAAuauACAAGUGUGAAUGaACGg -3'
miRNA:   3'- cAUUGGCUU---UGUUCACGUUUACgUGC- -5'
32795 5' -44.6 NC_007346.1 + 189881 0.7 0.999998
Target:  5'- -cGAUCGAAAUAGGUGCAAAUaC-CGa -3'
miRNA:   3'- caUUGGCUUUGUUCACGUUUAcGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.