Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32813 | 3' | -43.2 | NC_007346.1 | + | 394638 | 0.72 | 0.999999 |
Target: 5'- cAUCAuAUACAgaugCAACACCGcgCGGCa -3' miRNA: 3'- cUAGUuUAUGUa---GUUGUGGCa-GUUGa -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 392196 | 0.66 | 1 |
Target: 5'- ---gGGGUGCGUCGACAguggggCGUCAGCa -3' miRNA: 3'- cuagUUUAUGUAGUUGUg-----GCAGUUGa -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 385884 | 0.68 | 1 |
Target: 5'- --cCGAAUGCAaauauaaacuauUCGGCACaGUCGACUa -3' miRNA: 3'- cuaGUUUAUGU------------AGUUGUGgCAGUUGA- -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 378268 | 0.75 | 0.999856 |
Target: 5'- --aUggGUGCGUCAAUugCGUCAAUg -3' miRNA: 3'- cuaGuuUAUGUAGUUGugGCAGUUGa -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 371129 | 0.67 | 1 |
Target: 5'- uAUCGGGUGCA---ACuCCGUCGGCUg -3' miRNA: 3'- cUAGUUUAUGUaguUGuGGCAGUUGA- -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 361524 | 0.71 | 0.999999 |
Target: 5'- --cCGGAUAUcuaugCGAUACCGUCGACUg -3' miRNA: 3'- cuaGUUUAUGua---GUUGUGGCAGUUGA- -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 350394 | 0.68 | 1 |
Target: 5'- uGUCAAAaucUGCAUCcACuuccguaucaaaACCGUCAACa -3' miRNA: 3'- cUAGUUU---AUGUAGuUG------------UGGCAGUUGa -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 336975 | 0.66 | 1 |
Target: 5'- cGAUCAAAUGCAUUAcuaucauuugauuucACACgCGUCc--- -3' miRNA: 3'- -CUAGUUUAUGUAGU---------------UGUG-GCAGuuga -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 300242 | 0.69 | 1 |
Target: 5'- --cCGAAUGCAUCuacGGCAUCGcCAACa -3' miRNA: 3'- cuaGUUUAUGUAG---UUGUGGCaGUUGa -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 293393 | 0.69 | 1 |
Target: 5'- cGUCAGAUGaugaGACGCCGUCAGu- -3' miRNA: 3'- cUAGUUUAUguagUUGUGGCAGUUga -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 289421 | 0.66 | 1 |
Target: 5'- aGAUCAGAaGCcgCAGagaCGUCAACa -3' miRNA: 3'- -CUAGUUUaUGuaGUUgugGCAGUUGa -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 268968 | 0.75 | 0.999856 |
Target: 5'- cAUCAAGUACAUUAAUACCG-CAAa- -3' miRNA: 3'- cUAGUUUAUGUAGUUGUGGCaGUUga -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 268392 | 0.72 | 0.999996 |
Target: 5'- --gCAGAUGCAUugcaaCGACACCGUCAu-- -3' miRNA: 3'- cuaGUUUAUGUA-----GUUGUGGCAGUuga -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 260096 | 0.73 | 0.999995 |
Target: 5'- -cUCGAAcGCAUCAGCcaACuCGUCAACUc -3' miRNA: 3'- cuAGUUUaUGUAGUUG--UG-GCAGUUGA- -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 249312 | 0.66 | 1 |
Target: 5'- -uUCAAGUugAUUAACGacgugucaccggguuUCGUCGACa -3' miRNA: 3'- cuAGUUUAugUAGUUGU---------------GGCAGUUGa -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 238712 | 0.74 | 0.999935 |
Target: 5'- uGUCAAucgACAgauUCGGCAUCGUCAGCa -3' miRNA: 3'- cUAGUUua-UGU---AGUUGUGGCAGUUGa -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 233911 | 0.68 | 1 |
Target: 5'- uGAUCGAGUGCAUCAguuGgUGUCAugUu -3' miRNA: 3'- -CUAGUUUAUGUAGUug-UgGCAGUugA- -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 231364 | 0.66 | 1 |
Target: 5'- gGAUU--GUACGUCGAUugCGUCGu-- -3' miRNA: 3'- -CUAGuuUAUGUAGUUGugGCAGUuga -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 226981 | 0.71 | 0.999999 |
Target: 5'- uGAUCcGGUACAUCAACAUUaUCAAUa -3' miRNA: 3'- -CUAGuUUAUGUAGUUGUGGcAGUUGa -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 222158 | 0.67 | 1 |
Target: 5'- cGUCAAAUACAgccccacuguccgaaUCGGaAUCGUCAGCa -3' miRNA: 3'- cUAGUUUAUGU---------------AGUUgUGGCAGUUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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