miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32815 5' -50.3 NC_007346.1 + 165125 0.66 0.999968
Target:  5'- ---aGAUUGCAGUGGCGACucaaCCaagCGCu -3'
miRNA:   3'- guugUUAGUGUUACCGCUGc---GGa--GCG- -5'
32815 5' -50.3 NC_007346.1 + 363624 0.66 0.999968
Target:  5'- cCAGCAuugUACAuuguUGGCGugGCgUgCGUg -3'
miRNA:   3'- -GUUGUua-GUGUu---ACCGCugCGgA-GCG- -5'
32815 5' -50.3 NC_007346.1 + 241473 0.66 0.999968
Target:  5'- gAAUGAUC-CAGUGGCGGCucgauccauaGCCcgagagcaacgcgUCGCg -3'
miRNA:   3'- gUUGUUAGuGUUACCGCUG----------CGG-------------AGCG- -5'
32815 5' -50.3 NC_007346.1 + 40154 0.66 0.999968
Target:  5'- uCAAUGcgUGC-AUGGCGACGCacgUCGUu -3'
miRNA:   3'- -GUUGUuaGUGuUACCGCUGCGg--AGCG- -5'
32815 5' -50.3 NC_007346.1 + 372186 0.66 0.999968
Target:  5'- gAACAGUCgaauggaagauuGCcAUGGCGACGUagagacCGCa -3'
miRNA:   3'- gUUGUUAG------------UGuUACCGCUGCGga----GCG- -5'
32815 5' -50.3 NC_007346.1 + 399592 0.66 0.999947
Target:  5'- aGGCAAagCGCGAcuucagguuuaaucaGGCGACGCUUCaGCa -3'
miRNA:   3'- gUUGUUa-GUGUUa--------------CCGCUGCGGAG-CG- -5'
32815 5' -50.3 NC_007346.1 + 165577 0.66 0.999946
Target:  5'- gCGGCGAUgGCGAUGGUGGCGacgaaggUgGCg -3'
miRNA:   3'- -GUUGUUAgUGUUACCGCUGCgg-----AgCG- -5'
32815 5' -50.3 NC_007346.1 + 206635 0.66 0.999946
Target:  5'- aAGCAGUCGCGGauGCGAcCGCaguggCGCg -3'
miRNA:   3'- gUUGUUAGUGUUacCGCU-GCGga---GCG- -5'
32815 5' -50.3 NC_007346.1 + 78471 0.66 0.999946
Target:  5'- --gUAAUUACAAUGGCcaacucaaaGCGCCgCGCc -3'
miRNA:   3'- guuGUUAGUGUUACCGc--------UGCGGaGCG- -5'
32815 5' -50.3 NC_007346.1 + 165875 0.66 0.999929
Target:  5'- uCAGCGAUUggaAGUGGCGAaggGCgUCGUc -3'
miRNA:   3'- -GUUGUUAGug-UUACCGCUg--CGgAGCG- -5'
32815 5' -50.3 NC_007346.1 + 390877 0.66 0.999906
Target:  5'- uUAugGAgcUCGCAAccgagcuUGGCG--GCCUCGCa -3'
miRNA:   3'- -GUugUU--AGUGUU-------ACCGCugCGGAGCG- -5'
32815 5' -50.3 NC_007346.1 + 86432 0.66 0.999899
Target:  5'- cCAGCGuUCGCGGUGaGCGcaucacgcucggcCGCCUCGa -3'
miRNA:   3'- -GUUGUuAGUGUUAC-CGCu------------GCGGAGCg -5'
32815 5' -50.3 NC_007346.1 + 256315 0.66 0.999883
Target:  5'- cCAAC--UC-CAGUGGUG-CGCC-CGCg -3'
miRNA:   3'- -GUUGuuAGuGUUACCGCuGCGGaGCG- -5'
32815 5' -50.3 NC_007346.1 + 345237 0.66 0.999883
Target:  5'- cCGACGcuaGCccUGGgGugGCCUUGCa -3'
miRNA:   3'- -GUUGUuagUGuuACCgCugCGGAGCG- -5'
32815 5' -50.3 NC_007346.1 + 23150 0.66 0.999883
Target:  5'- cCAAUGAgacUUAC--UGGUaACGCCUCGCa -3'
miRNA:   3'- -GUUGUU---AGUGuuACCGcUGCGGAGCG- -5'
32815 5' -50.3 NC_007346.1 + 197810 0.67 0.99985
Target:  5'- gCGAUggUgGCGGUGGCGAUGgCggugGCg -3'
miRNA:   3'- -GUUGuuAgUGUUACCGCUGCgGag--CG- -5'
32815 5' -50.3 NC_007346.1 + 367637 0.67 0.99985
Target:  5'- aCAGCGGUaCACuccacUGGCGAUGCCa--- -3'
miRNA:   3'- -GUUGUUA-GUGuu---ACCGCUGCGGagcg -5'
32815 5' -50.3 NC_007346.1 + 91751 0.67 0.999762
Target:  5'- --uUAAUCACAuuAUGGaaACGgCUCGCa -3'
miRNA:   3'- guuGUUAGUGU--UACCgcUGCgGAGCG- -5'
32815 5' -50.3 NC_007346.1 + 68613 0.67 0.999762
Target:  5'- ---aGGUCACAAUGGUGAaauuCGUCUCcCa -3'
miRNA:   3'- guugUUAGUGUUACCGCU----GCGGAGcG- -5'
32815 5' -50.3 NC_007346.1 + 252346 0.67 0.999727
Target:  5'- gCAACAcUC-CGGUGGCaaugugggcggaucuGACGCCgaCGCa -3'
miRNA:   3'- -GUUGUuAGuGUUACCG---------------CUGCGGa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.