miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32823 3' -63 NC_007346.1 + 311189 0.66 0.834394
Target:  5'- aCUCCaccgccauuACCGCCGCCaucuccaucgccaUUACCGCCg--- -3'
miRNA:   3'- -GAGG---------UGGCGGCGGg------------AGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 306822 0.66 0.829874
Target:  5'- cCUCCACCaCCauuGCCUcCACCGCCa--- -3'
miRNA:   3'- -GAGGUGGcGG---CGGGaGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 307401 0.66 0.822223
Target:  5'- aUCCACCGCCGCCaucuccucCACCaCCa--- -3'
miRNA:   3'- gAGGUGGCGGCGGga------GUGGcGGacua -5'
32823 3' -63 NC_007346.1 + 307935 0.66 0.822223
Target:  5'- aUCCACCGCCGCCaucuccucCACCaCCa--- -3'
miRNA:   3'- gAGGUGGCGGCGGga------GUGGcGGacua -5'
32823 3' -63 NC_007346.1 + 199015 0.66 0.806502
Target:  5'- -aUCACCGCCaCCaccaUCACCGCCa--- -3'
miRNA:   3'- gaGGUGGCGGcGGg---AGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 304696 0.67 0.781969
Target:  5'- -aCCACCGCCGCaauuCUCGCCaCCg--- -3'
miRNA:   3'- gaGGUGGCGGCGg---GAGUGGcGGacua -5'
32823 3' -63 NC_007346.1 + 305608 0.67 0.781969
Target:  5'- uCUCCACCGCCacguccaccCCCUU-CCGCCUc-- -3'
miRNA:   3'- -GAGGUGGCGGc--------GGGAGuGGCGGAcua -5'
32823 3' -63 NC_007346.1 + 305903 0.67 0.773562
Target:  5'- nUCCACCGCCcccaccccCCCUCGCCcCCUu-- -3'
miRNA:   3'- gAGGUGGCGGc-------GGGAGUGGcGGAcua -5'
32823 3' -63 NC_007346.1 + 199239 0.67 0.765053
Target:  5'- uCUCCGCCaCCGCCaucuccgcCACCGCCa--- -3'
miRNA:   3'- -GAGGUGGcGGCGGga------GUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 57853 0.67 0.747751
Target:  5'- uUCCcCCGCCGCCCaauUCACCaCCa--- -3'
miRNA:   3'- gAGGuGGCGGCGGG---AGUGGcGGacua -5'
32823 3' -63 NC_007346.1 + 310164 0.67 0.742493
Target:  5'- uCUCCGCCGCCcCCUUCcuccuccccaucuccGCCGCCc--- -3'
miRNA:   3'- -GAGGUGGCGGcGGGAG---------------UGGCGGacua -5'
32823 3' -63 NC_007346.1 + 239641 0.67 0.738972
Target:  5'- gCUCCuugggcgguuCCGCCGCCUUCuuCGCCUu-- -3'
miRNA:   3'- -GAGGu---------GGCGGCGGGAGugGCGGAcua -5'
32823 3' -63 NC_007346.1 + 311241 0.68 0.730117
Target:  5'- uUCCACCGCCaCCaucucCACCGCCa--- -3'
miRNA:   3'- gAGGUGGCGGcGGga---GUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 198984 0.68 0.730117
Target:  5'- uCUCCACCaCCGCCaucuccacCACCGCCa--- -3'
miRNA:   3'- -GAGGUGGcGGCGGga------GUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 198879 0.68 0.730117
Target:  5'- uCUCCACCaCCGCCaucuccacCACCGCCa--- -3'
miRNA:   3'- -GAGGUGGcGGCGGga------GUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 198364 0.68 0.730117
Target:  5'- uCUCCACCGCCaCCaucuccacCACCGCCa--- -3'
miRNA:   3'- -GAGGUGGCGGcGGga------GUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 135240 0.68 0.730117
Target:  5'- uCUuuGCCGCCuUCUUCGCCGCCUu-- -3'
miRNA:   3'- -GAggUGGCGGcGGGAGUGGCGGAcua -5'
32823 3' -63 NC_007346.1 + 128010 0.68 0.721194
Target:  5'- uCUCCACCGCCGCCgcCUcCACCa--UGGUg -3'
miRNA:   3'- -GAGGUGGCGGCGG--GA-GUGGcggACUA- -5'
32823 3' -63 NC_007346.1 + 60716 0.68 0.721194
Target:  5'- cCUCCACCGCCaucaCCUCcgccuCCGUCUGc- -3'
miRNA:   3'- -GAGGUGGCGGcg--GGAGu----GGCGGACua -5'
32823 3' -63 NC_007346.1 + 198074 0.68 0.712207
Target:  5'- -aCCAUCGCCGCCgC-CAUCGCCa--- -3'
miRNA:   3'- gaGGUGGCGGCGG-GaGUGGCGGacua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.