miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32823 5' -44.2 NC_007346.1 + 86529 0.66 1
Target:  5'- uACG-CUcGGCAUGGAGGaCGACGagGUUGGa -3'
miRNA:   3'- -UGUaGA-CCGUGUUUUC-GUUGU--UAACC- -5'
32823 5' -44.2 NC_007346.1 + 201254 0.67 1
Target:  5'- aACAUUUGGUgGCGGuuGCAACGG-UGGu -3'
miRNA:   3'- -UGUAGACCG-UGUUuuCGUUGUUaACC- -5'
32823 5' -44.2 NC_007346.1 + 380578 0.67 1
Target:  5'- ---gCUGuCAUggGGGCAAUAGUUGGu -3'
miRNA:   3'- uguaGACcGUGuuUUCGUUGUUAACC- -5'
32823 5' -44.2 NC_007346.1 + 59492 0.68 1
Target:  5'- gGCuagCUGGCuauCAAGuaucAGCuGGCAAUUGGg -3'
miRNA:   3'- -UGua-GACCGu--GUUU----UCG-UUGUUAACC- -5'
32823 5' -44.2 NC_007346.1 + 238296 0.69 1
Target:  5'- gACGUC-GGaCACAAAGGCGgaguacaagGCAAUUGc -3'
miRNA:   3'- -UGUAGaCC-GUGUUUUCGU---------UGUUAACc -5'
32823 5' -44.2 NC_007346.1 + 287122 0.69 1
Target:  5'- uGCGUgaGGCAUAAAAGUugAACAGUUu- -3'
miRNA:   3'- -UGUAgaCCGUGUUUUCG--UUGUUAAcc -5'
32823 5' -44.2 NC_007346.1 + 406202 0.69 1
Target:  5'- uGCGUCacGCGCuGAAGCAaaACAGUUGa -3'
miRNA:   3'- -UGUAGacCGUGuUUUCGU--UGUUAACc -5'
32823 5' -44.2 NC_007346.1 + 32921 0.69 1
Target:  5'- --uUCUGGUACAGuAGGC-ACAGUaaaUGGg -3'
miRNA:   3'- uguAGACCGUGUU-UUCGuUGUUA---ACC- -5'
32823 5' -44.2 NC_007346.1 + 153786 0.69 1
Target:  5'- aGCAUCUGcuGCACAGucGGCAGCAc---- -3'
miRNA:   3'- -UGUAGAC--CGUGUUu-UCGUUGUuaacc -5'
32823 5' -44.2 NC_007346.1 + 197883 0.67 1
Target:  5'- cAUAUUUGGCAUuuacuAGAGCGACAc---- -3'
miRNA:   3'- -UGUAGACCGUGu----UUUCGUUGUuaacc -5'
32823 5' -44.2 NC_007346.1 + 33937 0.67 1
Target:  5'- gUAUCUGGUGCAAcuuGCAACAu---- -3'
miRNA:   3'- uGUAGACCGUGUUuu-CGUUGUuaacc -5'
32823 5' -44.2 NC_007346.1 + 311912 0.67 1
Target:  5'- gGCuUCUGGCugAAucuGCAAUggUgacUGGu -3'
miRNA:   3'- -UGuAGACCGugUUuu-CGUUGuuA---ACC- -5'
32823 5' -44.2 NC_007346.1 + 177242 0.66 1
Target:  5'- gACAUaCUGGaACAAAAGCGcaaagacgACAAaUGGc -3'
miRNA:   3'- -UGUA-GACCgUGUUUUCGU--------UGUUaACC- -5'
32823 5' -44.2 NC_007346.1 + 211428 0.66 1
Target:  5'- -uGUCUGGCACuacuuuucuGCAcuaACAGUUGc -3'
miRNA:   3'- ugUAGACCGUGuuuu-----CGU---UGUUAACc -5'
32823 5' -44.2 NC_007346.1 + 219402 0.66 1
Target:  5'- uGCAUauaUGGCAUAuggaaauAAAGCAACAGa--- -3'
miRNA:   3'- -UGUAg--ACCGUGU-------UUUCGUUGUUaacc -5'
32823 5' -44.2 NC_007346.1 + 239870 0.66 1
Target:  5'- aGCAga-GGCGCGAucuGCAAUAAUUGc -3'
miRNA:   3'- -UGUagaCCGUGUUuu-CGUUGUUAACc -5'
32823 5' -44.2 NC_007346.1 + 166112 0.66 1
Target:  5'- gUAUCUGGCACAu--GCcACAAg--- -3'
miRNA:   3'- uGUAGACCGUGUuuuCGuUGUUaacc -5'
32823 5' -44.2 NC_007346.1 + 138172 0.67 1
Target:  5'- uGCGUCcggaccggGGCGCAcGAGCGGCGGa--- -3'
miRNA:   3'- -UGUAGa-------CCGUGUuUUCGUUGUUaacc -5'
32823 5' -44.2 NC_007346.1 + 3126 0.67 1
Target:  5'- aACA-CgGGUACAAua-CAACAGUUGGa -3'
miRNA:   3'- -UGUaGaCCGUGUUuucGUUGUUAACC- -5'
32823 5' -44.2 NC_007346.1 + 62029 0.67 1
Target:  5'- cGCAaugUUGGCACGAc-GCAACAAUUu- -3'
miRNA:   3'- -UGUa--GACCGUGUUuuCGUUGUUAAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.