miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32827 3' -57 NC_007346.1 + 349800 0.7 0.888413
Target:  5'- aCGgcGGCGguGGCgGCGgcgGcGGCGGCGGUGg -3'
miRNA:   3'- -GCuuCCGC--UCG-CGUa--C-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 314702 0.66 0.977116
Target:  5'- uGggGGUG-GCGgugGUGGG-GGCGGUGg -3'
miRNA:   3'- gCuuCCGCuCGCg--UACCCgCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 314663 0.68 0.941637
Target:  5'- aGggGGUGgugguuguGGUGgAUGGuGUGACGGUGg -3'
miRNA:   3'- gCuuCCGC--------UCGCgUACC-CGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 311392 0.7 0.90069
Target:  5'- gCGAGGGUGAGCuugacgGCAgagaagGcGGCGGCGAc- -3'
miRNA:   3'- -GCUUCCGCUCG------CGUa-----C-CCGCUGCUac -5'
32827 3' -57 NC_007346.1 + 310721 0.66 0.981278
Target:  5'- -cGGGGUG-GCGCAgGcGGUGugGGUGg -3'
miRNA:   3'- gcUUCCGCuCGCGUaC-CCGCugCUAC- -5'
32827 3' -57 NC_007346.1 + 310545 0.72 0.782625
Target:  5'- uGAAGGUGAG-GCggGGGaGGCGGUGg -3'
miRNA:   3'- gCUUCCGCUCgCGuaCCCgCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 310465 0.67 0.957196
Target:  5'- aGAuGGCGAgGCGgAUGguggggguGGUGACGGUGa -3'
miRNA:   3'- gCUuCCGCU-CGCgUAC--------CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 310348 0.7 0.881979
Target:  5'- aGGAGGCGAGgGUggugGUGauGGCGGCGGa- -3'
miRNA:   3'- gCUUCCGCUCgCG----UAC--CCGCUGCUac -5'
32827 3' -57 NC_007346.1 + 310261 0.67 0.963797
Target:  5'- uGgcGGCG-GCGgAUuuGGCGGCGGUGg -3'
miRNA:   3'- gCuuCCGCuCGCgUAc-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 310123 0.69 0.906527
Target:  5'- uGAAGGCaguGGCGgAgauGGCGGCGGUGg -3'
miRNA:   3'- gCUUCCGc--UCGCgUac-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 309712 0.67 0.97231
Target:  5'- aGgcGGCGGGCucgGCGgcgGcGGCGACGGc- -3'
miRNA:   3'- gCuuCCGCUCG---CGUa--C-CCGCUGCUac -5'
32827 3' -57 NC_007346.1 + 308992 0.69 0.922814
Target:  5'- aCGGAGGCGcAGC-CGUGcGGCG-CGAg- -3'
miRNA:   3'- -GCUUCCGC-UCGcGUAC-CCGCuGCUac -5'
32827 3' -57 NC_007346.1 + 308937 0.72 0.791155
Target:  5'- aGggGGCGAGgGgggGUGGG-GGCGGUGg -3'
miRNA:   3'- gCuuCCGCUCgCg--UACCCgCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 308869 0.66 0.983134
Target:  5'- gGAgcAGGCGGGgGUggaGUuGGUGGCGGUGg -3'
miRNA:   3'- gCU--UCCGCUCgCG---UAcCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 307166 0.7 0.89465
Target:  5'- gCGgcGGCGAcGgGCugggGGGCGGCGGg- -3'
miRNA:   3'- -GCuuCCGCU-CgCGua--CCCGCUGCUac -5'
32827 3' -57 NC_007346.1 + 306339 0.72 0.791155
Target:  5'- aGggGGCGAGgGgggGUGGG-GGCGGUGg -3'
miRNA:   3'- gCuuCCGCUCgCg--UACCCgCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 306048 0.67 0.957196
Target:  5'- gGGAGGCGgaAGgGgGUGGacGUGGCGGUGg -3'
miRNA:   3'- gCUUCCGC--UCgCgUACC--CGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 274531 0.66 0.977116
Target:  5'- aCGggGGUGAcggacgcgacggGCaGCAUGGGCaccGCGAg- -3'
miRNA:   3'- -GCuuCCGCU------------CG-CGUACCCGc--UGCUac -5'
32827 3' -57 NC_007346.1 + 272465 0.66 0.974796
Target:  5'- gCGGAGGUG-GCGgA--GGUGGCGGUGg -3'
miRNA:   3'- -GCUUCCGCuCGCgUacCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 261155 0.7 0.888413
Target:  5'- cCGguGGCGAGUugGCGaguUGGGCGACGc-- -3'
miRNA:   3'- -GCuuCCGCUCG--CGU---ACCCGCUGCuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.