miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32854 3' -48.9 NC_007383.1 + 111038 0.66 0.998503
Target:  5'- uCGAUGACGAUGGUGcgaagcGCGcCAAUGAa- -3'
miRNA:   3'- -GUUGCUGCUGUCGC------UGCuGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 37004 0.66 0.998503
Target:  5'- --cCGGCGACAGCaauaucGACGGCAAc---- -3'
miRNA:   3'- guuGCUGCUGUCG------CUGCUGUUacuau -5'
32854 3' -48.9 NC_007383.1 + 3826 0.66 0.998322
Target:  5'- uCAGCGACGGguucagcgucgggcuCAGCGAUGgguucaACGAUGGg- -3'
miRNA:   3'- -GUUGCUGCU---------------GUCGCUGC------UGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 86681 0.66 0.998191
Target:  5'- gAACGAuUGGCGGCGACaGCAAUa--- -3'
miRNA:   3'- gUUGCU-GCUGUCGCUGcUGUUAcuau -5'
32854 3' -48.9 NC_007383.1 + 3754 0.66 0.997827
Target:  5'- uCAGCGACGGgcuCAGCGACGGg------- -3'
miRNA:   3'- -GUUGCUGCU---GUCGCUGCUguuacuau -5'
32854 3' -48.9 NC_007383.1 + 52478 0.66 0.997403
Target:  5'- aAACGACGGCGGUGcgaguCGAgAauucAUGAUAu -3'
miRNA:   3'- gUUGCUGCUGUCGCu----GCUgU----UACUAU- -5'
32854 3' -48.9 NC_007383.1 + 131548 0.66 0.997403
Target:  5'- gAGCGuCGaaacGCGGCGGCGACAAa---- -3'
miRNA:   3'- gUUGCuGC----UGUCGCUGCUGUUacuau -5'
32854 3' -48.9 NC_007383.1 + 117120 0.67 0.9957
Target:  5'- --cCGACGACcaaAGCGACGAaggagGAUGu -3'
miRNA:   3'- guuGCUGCUG---UCGCUGCUguua-CUAU- -5'
32854 3' -48.9 NC_007383.1 + 5699 0.67 0.994124
Target:  5'- gGACGAUGACuccucgAGCGAUGAUAAcggGAUu -3'
miRNA:   3'- gUUGCUGCUG------UCGCUGCUGUUa--CUAu -5'
32854 3' -48.9 NC_007383.1 + 22398 0.67 0.994124
Target:  5'- uCGACGGCGgucagagcuccgGCGGUGACGACAu----- -3'
miRNA:   3'- -GUUGCUGC------------UGUCGCUGCUGUuacuau -5'
32854 3' -48.9 NC_007383.1 + 30281 0.67 0.993178
Target:  5'- aGACGACGACGcCGGCGAUAu----- -3'
miRNA:   3'- gUUGCUGCUGUcGCUGCUGUuacuau -5'
32854 3' -48.9 NC_007383.1 + 82034 0.68 0.989592
Target:  5'- gAGCGACGACcGCaccGACGACGGcGAc- -3'
miRNA:   3'- gUUGCUGCUGuCG---CUGCUGUUaCUau -5'
32854 3' -48.9 NC_007383.1 + 14959 0.68 0.988115
Target:  5'- aAGCGcUGACAcUGACGGCGAUGAa- -3'
miRNA:   3'- gUUGCuGCUGUcGCUGCUGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 6454 0.69 0.984679
Target:  5'- --cCGAUGAUAGCaGCGAUGAUGAc- -3'
miRNA:   3'- guuGCUGCUGUCGcUGCUGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 32593 0.69 0.984679
Target:  5'- aAGCGGCaGCAGaUGAUGAUAGUGAa- -3'
miRNA:   3'- gUUGCUGcUGUC-GCUGCUGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 35399 0.69 0.980534
Target:  5'- aCAGCGGUGGCAGCGAuuCGAguAUGGa- -3'
miRNA:   3'- -GUUGCUGCUGUCGCU--GCUguUACUau -5'
32854 3' -48.9 NC_007383.1 + 63095 0.69 0.978173
Target:  5'- aGACGACGACAacgaaGACGAgggaaaCGAUGAUGa -3'
miRNA:   3'- gUUGCUGCUGUcg---CUGCU------GUUACUAU- -5'
32854 3' -48.9 NC_007383.1 + 16750 0.69 0.978173
Target:  5'- uCGACGAaacCGAUAGCGACGuCAAUa--- -3'
miRNA:   3'- -GUUGCU---GCUGUCGCUGCuGUUAcuau -5'
32854 3' -48.9 NC_007383.1 + 110735 0.69 0.975606
Target:  5'- aCGACGAgGACGGCauCGACAuUGAUu -3'
miRNA:   3'- -GUUGCUgCUGUCGcuGCUGUuACUAu -5'
32854 3' -48.9 NC_007383.1 + 24011 0.7 0.971949
Target:  5'- -cACGACGACGGCGACaugaaucaaaacgaGACGuuucGUGAc- -3'
miRNA:   3'- guUGCUGCUGUCGCUG--------------CUGU----UACUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.