miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33032 3' -58.6 NC_007497.1 + 17769 0.66 0.534449
Target:  5'- uCGUGAagGGCGauucCGUCGCGCGAu-- -3'
miRNA:   3'- -GCACUa-CCGCgca-GCGGCGCGCUugc -5'
33032 3' -58.6 NC_007497.1 + 36136 0.66 0.534449
Target:  5'- gCGUGAUGGUG-GUCguGCCGCugauGCGGcauuuGCGu -3'
miRNA:   3'- -GCACUACCGCgCAG--CGGCG----CGCU-----UGC- -5'
33032 3' -58.6 NC_007497.1 + 39250 0.66 0.533404
Target:  5'- --cGAUGcGCGCGaugaaggUCGCCGCcaGCGAguaaGCGu -3'
miRNA:   3'- gcaCUAC-CGCGC-------AGCGGCG--CGCU----UGC- -5'
33032 3' -58.6 NC_007497.1 + 28911 0.66 0.524041
Target:  5'- uCGUGuuUGaGCaacCGUCGCUGuCGCGAugGg -3'
miRNA:   3'- -GCACu-AC-CGc--GCAGCGGC-GCGCUugC- -5'
33032 3' -58.6 NC_007497.1 + 36905 0.66 0.513713
Target:  5'- --gGAcGGCGUuaccGUCGCUguGCGCGAGCc -3'
miRNA:   3'- gcaCUaCCGCG----CAGCGG--CGCGCUUGc -5'
33032 3' -58.6 NC_007497.1 + 23259 0.66 0.513713
Target:  5'- gCGgGAUGGCGgG-CgGCUGCGaCGAGCu -3'
miRNA:   3'- -GCaCUACCGCgCaG-CGGCGC-GCUUGc -5'
33032 3' -58.6 NC_007497.1 + 31398 0.66 0.513713
Target:  5'- gCGUGAaauacUGGCaCGUUGCagaGCGCGGGa- -3'
miRNA:   3'- -GCACU-----ACCGcGCAGCGg--CGCGCUUgc -5'
33032 3' -58.6 NC_007497.1 + 6204 0.66 0.503468
Target:  5'- cCG-GAuuuUGGagGCGUgGgCGCGCGAGCGc -3'
miRNA:   3'- -GCaCU---ACCg-CGCAgCgGCGCGCUUGC- -5'
33032 3' -58.6 NC_007497.1 + 40314 0.66 0.503468
Target:  5'- cCGUGAaGGCGgGUCuGCCGacguccgaCGCGuuGGCGa -3'
miRNA:   3'- -GCACUaCCGCgCAG-CGGC--------GCGC--UUGC- -5'
33032 3' -58.6 NC_007497.1 + 26566 0.66 0.503468
Target:  5'- aCGUGAUGaacGUGaCGUCGCUgccggccgucaGCGCGGaaACGa -3'
miRNA:   3'- -GCACUAC---CGC-GCAGCGG-----------CGCGCU--UGC- -5'
33032 3' -58.6 NC_007497.1 + 17291 0.66 0.483253
Target:  5'- -----cGGCccgaGCGUCuGCCuGCGCGGGCGg -3'
miRNA:   3'- gcacuaCCG----CGCAG-CGG-CGCGCUUGC- -5'
33032 3' -58.6 NC_007497.1 + 41016 0.67 0.473293
Target:  5'- aCGUGAUGGgGC-UUGCgGCGUcGGCa -3'
miRNA:   3'- -GCACUACCgCGcAGCGgCGCGcUUGc -5'
33032 3' -58.6 NC_007497.1 + 12790 0.67 0.473293
Target:  5'- aGUGAgGGCGCcUCaaGCCGgCGCG-GCGg -3'
miRNA:   3'- gCACUaCCGCGcAG--CGGC-GCGCuUGC- -5'
33032 3' -58.6 NC_007497.1 + 42441 0.67 0.444054
Target:  5'- -aUGGUGGCacGgGUCGCgaGaCGCGAGCGc -3'
miRNA:   3'- gcACUACCG--CgCAGCGg-C-GCGCUUGC- -5'
33032 3' -58.6 NC_007497.1 + 2435 0.67 0.425136
Target:  5'- aGUGccGGUGCGcCGCUGgGCGuucgcGCGg -3'
miRNA:   3'- gCACuaCCGCGCaGCGGCgCGCu----UGC- -5'
33032 3' -58.6 NC_007497.1 + 23743 0.68 0.415858
Target:  5'- --gGAagGGCGCGU-GCCGUGCGcucAACGa -3'
miRNA:   3'- gcaCUa-CCGCGCAgCGGCGCGC---UUGC- -5'
33032 3' -58.6 NC_007497.1 + 8705 0.68 0.407616
Target:  5'- aCGUGAagcggaagcgggcggGGCGCGUCgGCCGCcCGGuCGu -3'
miRNA:   3'- -GCACUa--------------CCGCGCAG-CGGCGcGCUuGC- -5'
33032 3' -58.6 NC_007497.1 + 33181 0.68 0.406706
Target:  5'- -----cGGCGCGaUCguagGCCGCGCGAAuCGa -3'
miRNA:   3'- gcacuaCCGCGC-AG----CGGCGCGCUU-GC- -5'
33032 3' -58.6 NC_007497.1 + 40134 0.68 0.406706
Target:  5'- aCGUGAagcgcGGCGaCGUgcagGCCGCGCuGAACa -3'
miRNA:   3'- -GCACUa----CCGC-GCAg---CGGCGCG-CUUGc -5'
33032 3' -58.6 NC_007497.1 + 17582 0.68 0.406706
Target:  5'- -----cGGCGCGUgcaaguuCCGCGCGGGCGg -3'
miRNA:   3'- gcacuaCCGCGCAgc-----GGCGCGCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.