miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33033 3' -63.7 NC_007497.1 + 21037 0.66 0.286529
Target:  5'- aCGAuGA-GCGagCGCGGCCGCCGGa-- -3'
miRNA:   3'- -GUUcCUaCGCg-GCGCCGGCGGCCgcg -5'
33033 3' -63.7 NC_007497.1 + 3402 0.66 0.279674
Target:  5'- --uGGA-GCGCCGCacGCCGauggaCGGCGa -3'
miRNA:   3'- guuCCUaCGCGGCGc-CGGCg----GCCGCg -5'
33033 3' -63.7 NC_007497.1 + 4965 0.66 0.279674
Target:  5'- --uGGc--CGgUGCGGCCGUCGGCGg -3'
miRNA:   3'- guuCCuacGCgGCGCCGGCGGCCGCg -5'
33033 3' -63.7 NC_007497.1 + 3545 0.66 0.279674
Target:  5'- ---cGGUGCGCUuuGUGGCCGUgaaggCGGcCGCg -3'
miRNA:   3'- guucCUACGCGG--CGCCGGCG-----GCC-GCG- -5'
33033 3' -63.7 NC_007497.1 + 1246 0.66 0.27295
Target:  5'- uCGGGGAUGgGCCucgucGgGGUCGauGGUGCu -3'
miRNA:   3'- -GUUCCUACgCGG-----CgCCGGCggCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 32836 0.66 0.266356
Target:  5'- -cAGGAgucCGCCGagaacGCCGCUgGGCGCg -3'
miRNA:   3'- guUCCUac-GCGGCgc---CGGCGG-CCGCG- -5'
33033 3' -63.7 NC_007497.1 + 35621 0.66 0.266356
Target:  5'- --cGGcAUGgGCCGgGGCaCGUCGGaGCu -3'
miRNA:   3'- guuCC-UACgCGGCgCCG-GCGGCCgCG- -5'
33033 3' -63.7 NC_007497.1 + 43020 0.66 0.266356
Target:  5'- aCAAGGccgGCGUCGaccCGGCCGguaUCGGgGCu -3'
miRNA:   3'- -GUUCCua-CGCGGC---GCCGGC---GGCCgCG- -5'
33033 3' -63.7 NC_007497.1 + 33868 0.66 0.259892
Target:  5'- gAAGGggGCGaaCGCaGCCGa-GGCGCg -3'
miRNA:   3'- gUUCCuaCGCg-GCGcCGGCggCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 31886 0.66 0.259892
Target:  5'- --uGGAgcCGCCGCuccGGCCGCaGGgGCg -3'
miRNA:   3'- guuCCUacGCGGCG---CCGGCGgCCgCG- -5'
33033 3' -63.7 NC_007497.1 + 9103 0.66 0.259892
Target:  5'- -uGGGGUGCG-CG-GGCUGC-GGUGCa -3'
miRNA:   3'- guUCCUACGCgGCgCCGGCGgCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 37056 0.66 0.253557
Target:  5'- ---cGAUGcCGUCGaCGGCCGCCgaccaGGUGUa -3'
miRNA:   3'- guucCUAC-GCGGC-GCCGGCGG-----CCGCG- -5'
33033 3' -63.7 NC_007497.1 + 13771 0.66 0.253557
Target:  5'- gCAuGGGU-CGCCGCaggGGCCGCaCGGgaCGCc -3'
miRNA:   3'- -GUuCCUAcGCGGCG---CCGGCG-GCC--GCG- -5'
33033 3' -63.7 NC_007497.1 + 25876 0.66 0.253557
Target:  5'- cCAGGcGAagGCGaacgaaaaUGCGGCCGCCGugcagaccgucGCGCa -3'
miRNA:   3'- -GUUC-CUa-CGCg-------GCGCCGGCGGC-----------CGCG- -5'
33033 3' -63.7 NC_007497.1 + 36991 0.66 0.253557
Target:  5'- --cGGcgGCGCCGgaGGCgGaacaagcuUCGGCGCg -3'
miRNA:   3'- guuCCuaCGCGGCg-CCGgC--------GGCCGCG- -5'
33033 3' -63.7 NC_007497.1 + 14381 0.67 0.247348
Target:  5'- ---cGAUGCagaGCCGCgGGCCGCUcgcuGGCGa -3'
miRNA:   3'- guucCUACG---CGGCG-CCGGCGG----CCGCg -5'
33033 3' -63.7 NC_007497.1 + 36682 0.67 0.241267
Target:  5'- aCAGcGAUGC-CCaaGCGGUCGCCgaGGCGUa -3'
miRNA:   3'- -GUUcCUACGcGG--CGCCGGCGG--CCGCG- -5'
33033 3' -63.7 NC_007497.1 + 13620 0.67 0.223767
Target:  5'- uGAGGAagagcggGcCGCCGCaugGGCCGCCgcacgGGcCGCa -3'
miRNA:   3'- gUUCCUa------C-GCGGCG---CCGGCGG-----CC-GCG- -5'
33033 3' -63.7 NC_007497.1 + 28346 0.67 0.218179
Target:  5'- --cGGAUGCGCCuuGGgUGCggcaGGUGCa -3'
miRNA:   3'- guuCCUACGCGGcgCCgGCGg---CCGCG- -5'
33033 3' -63.7 NC_007497.1 + 19295 0.67 0.218179
Target:  5'- -cAGuAUGCGCaGCGGCCGUCgaacauuuGGCGUa -3'
miRNA:   3'- guUCcUACGCGgCGCCGGCGG--------CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.