miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33035 5' -56.1 NC_007497.1 + 3812 0.66 0.588665
Target:  5'- cUCG-CAu--GCagGCGCUcggucgacugaaGGCCGGCGCg -3'
miRNA:   3'- uAGUaGUuuuCG--CGCGA------------CCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 992 0.66 0.585306
Target:  5'- gAUCAUCGAAGGCgucuucggggugaaGCGCagccUGGCUGaCGUg -3'
miRNA:   3'- -UAGUAGUUUUCG--------------CGCG----ACCGGCcGCG- -5'
33035 5' -56.1 NC_007497.1 + 15323 0.66 0.577485
Target:  5'- ---------cGCgGCGCUcGGCCGGCGUc -3'
miRNA:   3'- uaguaguuuuCG-CGCGA-CCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 21471 0.66 0.57414
Target:  5'- cAUCGUCuGAAAGCagggcguccgugacGCGCUGGaUCuGCGCu -3'
miRNA:   3'- -UAGUAG-UUUUCG--------------CGCGACC-GGcCGCG- -5'
33035 5' -56.1 NC_007497.1 + 2910 0.66 0.566353
Target:  5'- uUCAacggCAGAAGCaugcacgcgGUGCUGGCgcaUGGUGCg -3'
miRNA:   3'- uAGUa---GUUUUCG---------CGCGACCG---GCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 35052 0.66 0.555277
Target:  5'- -aCA-CGGAuGCGaaGCUGGCCgaGGCGCg -3'
miRNA:   3'- uaGUaGUUUuCGCg-CGACCGG--CCGCG- -5'
33035 5' -56.1 NC_007497.1 + 17633 0.66 0.555277
Target:  5'- -cCGUCAccucGGCGCGCggcuccGGCUGGCcCg -3'
miRNA:   3'- uaGUAGUuu--UCGCGCGa-----CCGGCCGcG- -5'
33035 5' -56.1 NC_007497.1 + 26853 0.66 0.553069
Target:  5'- gAUCGaCGAcGGCGCGCagauucagcagcGGCCGGUGa -3'
miRNA:   3'- -UAGUaGUUuUCGCGCGa-----------CCGGCCGCg -5'
33035 5' -56.1 NC_007497.1 + 14325 0.66 0.551966
Target:  5'- cAUCAUCAGuAAGCGUgauccagugcgucgGCUgucugaGGCCGGagaGCg -3'
miRNA:   3'- -UAGUAGUU-UUCGCG--------------CGA------CCGGCCg--CG- -5'
33035 5' -56.1 NC_007497.1 + 9714 0.67 0.533325
Target:  5'- uUCAgcCAGccGaCGuCGC-GGCCGGCGCg -3'
miRNA:   3'- uAGUa-GUUuuC-GC-GCGaCCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 29776 0.67 0.533325
Target:  5'- aGUCuUCGGgcgcGAGCGCGaaCUGGUcggucggaguCGGCGCg -3'
miRNA:   3'- -UAGuAGUU----UUCGCGC--GACCG----------GCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 30441 0.67 0.533325
Target:  5'- gGUCGgugCGAAGGUGUuuc-GCCGGCGCa -3'
miRNA:   3'- -UAGUa--GUUUUCGCGcgacCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 43168 0.67 0.522465
Target:  5'- -cCGUCcgugcuGGAGCGcCGCaaagagauUGcGCCGGCGCu -3'
miRNA:   3'- uaGUAGu-----UUUCGC-GCG--------AC-CGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 5627 0.67 0.522465
Target:  5'- -gCAUCAGAAG-GUagGCaaggGGCCGGCGa -3'
miRNA:   3'- uaGUAGUUUUCgCG--CGa---CCGGCCGCg -5'
33035 5' -56.1 NC_007497.1 + 23961 0.67 0.51169
Target:  5'- -aCA-CGAAGgacguGCGCGCcGGCCaGCGCu -3'
miRNA:   3'- uaGUaGUUUU-----CGCGCGaCCGGcCGCG- -5'
33035 5' -56.1 NC_007497.1 + 21509 0.67 0.501009
Target:  5'- ---uUCucGAGCGCGCcGugugaaugcuGCCGGCGCc -3'
miRNA:   3'- uaguAGuuUUCGCGCGaC----------CGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 18493 0.67 0.479951
Target:  5'- -gCAUCuGAAGCGagagaaCUGGCCGGCcCg -3'
miRNA:   3'- uaGUAGuUUUCGCgc----GACCGGCCGcG- -5'
33035 5' -56.1 NC_007497.1 + 2625 0.68 0.469585
Target:  5'- aAUCG-CAAGgauGCGcCGCggccGCCGGCGCg -3'
miRNA:   3'- -UAGUaGUUUu--CGC-GCGac--CGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 32898 0.68 0.469585
Target:  5'- gAUCAgcggcUCAcguuGAGCGCGaUUGGCguguUGGCGCg -3'
miRNA:   3'- -UAGU-----AGUu---UUCGCGC-GACCG----GCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 16235 0.68 0.463421
Target:  5'- uUCGuUCGcgGGCGCccucacuuccacuacGCcgacGGCCGGCGCg -3'
miRNA:   3'- uAGU-AGUuuUCGCG---------------CGa---CCGGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.