miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33051 3' -52.1 NC_007497.1 + 17060 1.14 0.000861
Target:  5'- aCACAUCGAACGGCGGCAUCGAUUGCCa -3'
miRNA:   3'- -GUGUAGCUUGCCGCCGUAGCUAACGG- -5'
33051 3' -52.1 NC_007497.1 + 16160 0.69 0.693262
Target:  5'- uCACGacCGAACGGCGG-AUUGA--GCCa -3'
miRNA:   3'- -GUGUa-GCUUGCCGCCgUAGCUaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 32580 0.68 0.70442
Target:  5'- gACuggCGGGCGGCcugucggauGGCGUCGcg-GCCg -3'
miRNA:   3'- gUGua-GCUUGCCG---------CCGUAGCuaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 36949 0.66 0.855817
Target:  5'- cCGCuggCgGggUGGCGGCA-CGAauucaUGCCg -3'
miRNA:   3'- -GUGua-G-CuuGCCGCCGUaGCUa----ACGG- -5'
33051 3' -52.1 NC_007497.1 + 25666 0.73 0.42084
Target:  5'- --gGUCGAcccgaacaACGGCGGC-UCGAUgaucgUGCCa -3'
miRNA:   3'- gugUAGCU--------UGCCGCCGuAGCUA-----ACGG- -5'
33051 3' -52.1 NC_007497.1 + 31495 0.73 0.46096
Target:  5'- aACGUUGGAaGcGCGGUAaCGGUUGCCa -3'
miRNA:   3'- gUGUAGCUUgC-CGCCGUaGCUAACGG- -5'
33051 3' -52.1 NC_007497.1 + 43046 0.71 0.53232
Target:  5'- uCGCAUCGAGCgcgcugGGCuucuauacaaggccGGCGUCGAcccgGCCg -3'
miRNA:   3'- -GUGUAGCUUG------CCG--------------CCGUAGCUaa--CGG- -5'
33051 3' -52.1 NC_007497.1 + 7695 0.71 0.568927
Target:  5'- aCGCAUCGGGCGG-GuCAUCGAggggGCUg -3'
miRNA:   3'- -GUGUAGCUUGCCgCcGUAGCUaa--CGG- -5'
33051 3' -52.1 NC_007497.1 + 8699 0.69 0.65946
Target:  5'- aGCGgaagCGGGCGGgGcGCGUCGGccGCCc -3'
miRNA:   3'- gUGUa---GCUUGCCgC-CGUAGCUaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 9703 0.69 0.692143
Target:  5'- gACGUCGcggcCGGCGcgccgggugugaaGCAUCGAUacuauUGCCg -3'
miRNA:   3'- gUGUAGCuu--GCCGC-------------CGUAGCUA-----ACGG- -5'
33051 3' -52.1 NC_007497.1 + 13347 0.69 0.663988
Target:  5'- gCGCAUCGAGCGuGaCGGUAaagcgcggaguauuuUCcAUUGCCu -3'
miRNA:   3'- -GUGUAGCUUGC-C-GCCGU---------------AGcUAACGG- -5'
33051 3' -52.1 NC_007497.1 + 33391 0.69 0.648124
Target:  5'- gCGCGUCGAgGCGGUGGCGacCGAcaaGCUg -3'
miRNA:   3'- -GUGUAGCU-UGCCGCCGUa-GCUaa-CGG- -5'
33051 3' -52.1 NC_007497.1 + 39622 0.79 0.210677
Target:  5'- uCACGUCGGACGGCauCAUCGAUcuggucuacgaccUGCCg -3'
miRNA:   3'- -GUGUAGCUUGCCGccGUAGCUA-------------ACGG- -5'
33051 3' -52.1 NC_007497.1 + 13086 0.69 0.67077
Target:  5'- aGCGcgGGGCGGUGGUauucauGUCGGUUGUCa -3'
miRNA:   3'- gUGUagCUUGCCGCCG------UAGCUAACGG- -5'
33051 3' -52.1 NC_007497.1 + 42887 0.76 0.314141
Target:  5'- cCGCAUC--GCGGCGGCGUCGGggcaGCg -3'
miRNA:   3'- -GUGUAGcuUGCCGCCGUAGCUaa--CGg -5'
33051 3' -52.1 NC_007497.1 + 4258 0.7 0.636771
Target:  5'- gGCGcCGGAauUGGCGGCGaaUCGuccGUUGCCg -3'
miRNA:   3'- gUGUaGCUU--GCCGCCGU--AGC---UAACGG- -5'
33051 3' -52.1 NC_007497.1 + 27609 0.69 0.679791
Target:  5'- aCAUcgCGAGCGuguuccGCGGCAUCGccuacuggggGCCg -3'
miRNA:   3'- -GUGuaGCUUGC------CGCCGUAGCuaa-------CGG- -5'
33051 3' -52.1 NC_007497.1 + 30944 0.69 0.693262
Target:  5'- gGCGUCGAuuguUGGCgGGCAguuugcggggaUCGAcgGCCu -3'
miRNA:   3'- gUGUAGCUu---GCCG-CCGU-----------AGCUaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 27696 0.75 0.364804
Target:  5'- --uGUCGGACggaaaaGGCGGCGUCGA--GCCg -3'
miRNA:   3'- gugUAGCUUG------CCGCCGUAGCUaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 36841 0.72 0.513789
Target:  5'- uGCG-CGAgGCGGCgGGCGUCGA--GCCg -3'
miRNA:   3'- gUGUaGCU-UGCCG-CCGUAGCUaaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.