miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33059 5' -51 NC_007497.1 + 27271 0.66 0.914635
Target:  5'- uGCGcCUGCGACGUGCaccCGAa--- -3'
miRNA:   3'- gCGCuGAUGCUGCGCGauuGCUaucc -5'
33059 5' -51 NC_007497.1 + 10166 0.66 0.914635
Target:  5'- aGCGGCagccUGCG-CGCGCaGAUGGcuUGGGc -3'
miRNA:   3'- gCGCUG----AUGCuGCGCGaUUGCU--AUCC- -5'
33059 5' -51 NC_007497.1 + 41427 0.66 0.914635
Target:  5'- cCGCGAgaugcuggauUUGCcuCGCGCUGACGAUccGGu -3'
miRNA:   3'- -GCGCU----------GAUGcuGCGCGAUUGCUAu-CC- -5'
33059 5' -51 NC_007497.1 + 4563 0.66 0.914635
Target:  5'- aGCGuCguuuucgACGACGCGCUGAUccaucGGGu -3'
miRNA:   3'- gCGCuGa------UGCUGCGCGAUUGcua--UCC- -5'
33059 5' -51 NC_007497.1 + 26860 0.66 0.914635
Target:  5'- aCGCGGCgaucgacgACGGCGCGCagauucagcAGCGGccGGu -3'
miRNA:   3'- -GCGCUGa-------UGCUGCGCGa--------UUGCUauCC- -5'
33059 5' -51 NC_007497.1 + 35824 0.66 0.914635
Target:  5'- aGCGGCUGCcGCGUuGCUugcGCGAUGc- -3'
miRNA:   3'- gCGCUGAUGcUGCG-CGAu--UGCUAUcc -5'
33059 5' -51 NC_007497.1 + 25426 0.66 0.912684
Target:  5'- gCGCGuCUAUGACggaaacggcaugcuGCGCguGCGuAUGGGg -3'
miRNA:   3'- -GCGCuGAUGCUG--------------CGCGauUGC-UAUCC- -5'
33059 5' -51 NC_007497.1 + 22095 0.66 0.908028
Target:  5'- aGCaGGCgcCGAaaaGCGCUcGAUGGUGGGc -3'
miRNA:   3'- gCG-CUGauGCUg--CGCGA-UUGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 26585 0.66 0.908028
Target:  5'- gCGCGugUGCG-CGCGCagAACGu---- -3'
miRNA:   3'- -GCGCugAUGCuGCGCGa-UUGCuaucc -5'
33059 5' -51 NC_007497.1 + 27280 0.66 0.908028
Target:  5'- uCGCGA-UACGAgGCGggAACGGUGu- -3'
miRNA:   3'- -GCGCUgAUGCUgCGCgaUUGCUAUcc -5'
33059 5' -51 NC_007497.1 + 17268 0.66 0.908028
Target:  5'- gGCGGCUGCGGgGCGgccGCGAUu-- -3'
miRNA:   3'- gCGCUGAUGCUgCGCgauUGCUAucc -5'
33059 5' -51 NC_007497.1 + 32879 0.66 0.901134
Target:  5'- gCGCGAU--UGGCGUGUUGGCGcgAGc -3'
miRNA:   3'- -GCGCUGauGCUGCGCGAUUGCuaUCc -5'
33059 5' -51 NC_007497.1 + 19078 0.66 0.901134
Target:  5'- aGCGGCUucgagaGCGGCGCGaaguucggUGACGGUuuGGc -3'
miRNA:   3'- gCGCUGA------UGCUGCGCg-------AUUGCUAu-CC- -5'
33059 5' -51 NC_007497.1 + 4175 0.66 0.901134
Target:  5'- uGCGGugcGCGACGCGCgggcCGGaAGGa -3'
miRNA:   3'- gCGCUga-UGCUGCGCGauu-GCUaUCC- -5'
33059 5' -51 NC_007497.1 + 40123 0.66 0.893955
Target:  5'- gGCGACgUGCaGGcCGCGCUGAacaaGGgcgAGGa -3'
miRNA:   3'- gCGCUG-AUG-CU-GCGCGAUUg---CUa--UCC- -5'
33059 5' -51 NC_007497.1 + 35180 0.66 0.893955
Target:  5'- uGCGGCUGCGGCGaaacugcagaaCGCacaGGCGGcggAGGu -3'
miRNA:   3'- gCGCUGAUGCUGC-----------GCGa--UUGCUa--UCC- -5'
33059 5' -51 NC_007497.1 + 15523 0.66 0.893955
Target:  5'- aCGCGAaUGCGACaGCGCUucccuuGGCGAc--- -3'
miRNA:   3'- -GCGCUgAUGCUG-CGCGA------UUGCUaucc -5'
33059 5' -51 NC_007497.1 + 39155 0.66 0.893955
Target:  5'- uCGCGACggccCGACGCuuacucGCUGGCGGc--- -3'
miRNA:   3'- -GCGCUGau--GCUGCG------CGAUUGCUaucc -5'
33059 5' -51 NC_007497.1 + 3377 0.66 0.886496
Target:  5'- uGCGGCgcACuGCGCGCgGGCGAUAu- -3'
miRNA:   3'- gCGCUGa-UGcUGCGCGaUUGCUAUcc -5'
33059 5' -51 NC_007497.1 + 22869 0.66 0.886496
Target:  5'- gCGCGcGCUGCGACGU---AACGAgcGGc -3'
miRNA:   3'- -GCGC-UGAUGCUGCGcgaUUGCUauCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.