miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33059 5' -51 NC_007497.1 + 42495 0.7 0.713709
Target:  5'- uGaCGGCU-CGACGUGCgGACGAgcuUGGGc -3'
miRNA:   3'- gC-GCUGAuGCUGCGCGaUUGCU---AUCC- -5'
33059 5' -51 NC_007497.1 + 41427 0.66 0.914635
Target:  5'- cCGCGAgaugcuggauUUGCcuCGCGCUGACGAUccGGu -3'
miRNA:   3'- -GCGCU----------GAUGcuGCGCGAUUGCUAu-CC- -5'
33059 5' -51 NC_007497.1 + 40507 0.67 0.878762
Target:  5'- aGCGcCcgGCGugGCGUUuccGGCGGUAGc -3'
miRNA:   3'- gCGCuGa-UGCugCGCGA---UUGCUAUCc -5'
33059 5' -51 NC_007497.1 + 40299 0.73 0.534465
Target:  5'- uGcCGACgucCGACGCGUUGGCGA-AGGu -3'
miRNA:   3'- gC-GCUGau-GCUGCGCGAUUGCUaUCC- -5'
33059 5' -51 NC_007497.1 + 40123 0.66 0.893955
Target:  5'- gGCGACgUGCaGGcCGCGCUGAacaaGGgcgAGGa -3'
miRNA:   3'- gCGCUG-AUG-CU-GCGCGAUUg---CUa--UCC- -5'
33059 5' -51 NC_007497.1 + 39155 0.66 0.893955
Target:  5'- uCGCGACggccCGACGCuuacucGCUGGCGGc--- -3'
miRNA:   3'- -GCGCUGau--GCUGCG------CGAUUGCUaucc -5'
33059 5' -51 NC_007497.1 + 35824 0.66 0.914635
Target:  5'- aGCGGCUGCcGCGUuGCUugcGCGAUGc- -3'
miRNA:   3'- gCGCUGAUGcUGCG-CGAu--UGCUAUcc -5'
33059 5' -51 NC_007497.1 + 35180 0.66 0.893955
Target:  5'- uGCGGCUGCGGCGaaacugcagaaCGCacaGGCGGcggAGGu -3'
miRNA:   3'- gCGCUGAUGCUGC-----------GCGa--UUGCUa--UCC- -5'
33059 5' -51 NC_007497.1 + 34732 0.67 0.845214
Target:  5'- uCGCGACgcaGGCGCGCgAGCGcgccgaacgAGGc -3'
miRNA:   3'- -GCGCUGaugCUGCGCGaUUGCua-------UCC- -5'
33059 5' -51 NC_007497.1 + 34175 0.69 0.777822
Target:  5'- gCGCGACUcguCGACGUGUUcgucgcGGCGAcgcgcgGGGg -3'
miRNA:   3'- -GCGCUGAu--GCUGCGCGA------UUGCUa-----UCC- -5'
33059 5' -51 NC_007497.1 + 34078 0.67 0.87076
Target:  5'- cCGCGGCcgACaggGGCGCGCgcacgcuggcAGCGAUGGa -3'
miRNA:   3'- -GCGCUGa-UG---CUGCGCGa---------UUGCUAUCc -5'
33059 5' -51 NC_007497.1 + 33111 0.74 0.470441
Target:  5'- gCGCGAgaGCuGGcCGCGCUGuCGAUGGGc -3'
miRNA:   3'- -GCGCUgaUG-CU-GCGCGAUuGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 32879 0.66 0.901134
Target:  5'- gCGCGAU--UGGCGUGUUGGCGcgAGc -3'
miRNA:   3'- -GCGCUGauGCUGCGCGAUUGCuaUCc -5'
33059 5' -51 NC_007497.1 + 32050 0.67 0.87076
Target:  5'- uGCGugUGCGcaaggcCGgGUUcGGCGAUGGGu -3'
miRNA:   3'- gCGCugAUGCu-----GCgCGA-UUGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 31054 0.72 0.567635
Target:  5'- aCGCuACUGCuGAC-CGCUGGCGaAUGGGa -3'
miRNA:   3'- -GCGcUGAUG-CUGcGCGAUUGC-UAUCC- -5'
33059 5' -51 NC_007497.1 + 30996 0.7 0.680337
Target:  5'- aCGCGA--ACGGCGUGaccCUAACGAUGGc -3'
miRNA:   3'- -GCGCUgaUGCUGCGC---GAUUGCUAUCc -5'
33059 5' -51 NC_007497.1 + 30717 0.76 0.363533
Target:  5'- cCGCGAC-ACGACGCGCUGucagcuggccccaAC-AUGGGa -3'
miRNA:   3'- -GCGCUGaUGCUGCGCGAU-------------UGcUAUCC- -5'
33059 5' -51 NC_007497.1 + 27280 0.66 0.908028
Target:  5'- uCGCGA-UACGAgGCGggAACGGUGu- -3'
miRNA:   3'- -GCGCUgAUGCUgCGCgaUUGCUAUcc -5'
33059 5' -51 NC_007497.1 + 27271 0.66 0.914635
Target:  5'- uGCGcCUGCGACGUGCaccCGAa--- -3'
miRNA:   3'- gCGCuGAUGCUGCGCGauuGCUaucc -5'
33059 5' -51 NC_007497.1 + 27248 0.69 0.788021
Target:  5'- gGuCGGCauggACGGCGUGCUGGuCGGUccGGGg -3'
miRNA:   3'- gC-GCUGa---UGCUGCGCGAUU-GCUA--UCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.