miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33059 5' -51 NC_007497.1 + 27248 0.69 0.788021
Target:  5'- gGuCGGCauggACGGCGUGCUGGuCGGUccGGGg -3'
miRNA:   3'- gC-GCUGa---UGCUGCGCGAUU-GCUA--UCC- -5'
33059 5' -51 NC_007497.1 + 23170 1.12 0.001577
Target:  5'- gCGCGACUACGACGCGCUAACGAUAGGg -3'
miRNA:   3'- -GCGCUGAUGCUGCGCGAUUGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 33111 0.74 0.470441
Target:  5'- gCGCGAgaGCuGGcCGCGCUGuCGAUGGGc -3'
miRNA:   3'- -GCGCUgaUG-CU-GCGCGAUuGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 15713 0.74 0.480854
Target:  5'- --aGACUGCuACGUGCguugGACGGUGGGa -3'
miRNA:   3'- gcgCUGAUGcUGCGCGa---UUGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 40299 0.73 0.534465
Target:  5'- uGcCGACgucCGACGCGUUGGCGA-AGGu -3'
miRNA:   3'- gC-GCUGau-GCUGCGCGAUUGCUaUCC- -5'
33059 5' -51 NC_007497.1 + 31054 0.72 0.567635
Target:  5'- aCGCuACUGCuGAC-CGCUGGCGaAUGGGa -3'
miRNA:   3'- -GCGcUGAUG-CUGcGCGAUUGC-UAUCC- -5'
33059 5' -51 NC_007497.1 + 30996 0.7 0.680337
Target:  5'- aCGCGA--ACGGCGUGaccCUAACGAUGGc -3'
miRNA:   3'- -GCGCUgaUGCUGCGC---GAUUGCUAUCc -5'
33059 5' -51 NC_007497.1 + 3153 0.7 0.713709
Target:  5'- -uCGACgGCGACGCGCUGAuCGAc--- -3'
miRNA:   3'- gcGCUGaUGCUGCGCGAUU-GCUaucc -5'
33059 5' -51 NC_007497.1 + 16733 0.69 0.746316
Target:  5'- aCGCGA--GCGGCGCGCUcccGGCG-UAGc -3'
miRNA:   3'- -GCGCUgaUGCUGCGCGA---UUGCuAUCc -5'
33059 5' -51 NC_007497.1 + 40123 0.66 0.893955
Target:  5'- gGCGACgUGCaGGcCGCGCUGAacaaGGgcgAGGa -3'
miRNA:   3'- gCGCUG-AUG-CU-GCGCGAUUg---CUa--UCC- -5'
33059 5' -51 NC_007497.1 + 34078 0.67 0.87076
Target:  5'- cCGCGGCcgACaggGGCGCGCgcacgcuggcAGCGAUGGa -3'
miRNA:   3'- -GCGCUGa-UG---CUGCGCGa---------UUGCUAUCc -5'
33059 5' -51 NC_007497.1 + 34732 0.67 0.845214
Target:  5'- uCGCGACgcaGGCGCGCgAGCGcgccgaacgAGGc -3'
miRNA:   3'- -GCGCUGaugCUGCGCGaUUGCua-------UCC- -5'
33059 5' -51 NC_007497.1 + 4441 0.69 0.788021
Target:  5'- cCGCGGCUACaaGAUGCG-UAGCGAgacgccGGa -3'
miRNA:   3'- -GCGCUGAUG--CUGCGCgAUUGCUau----CC- -5'
33059 5' -51 NC_007497.1 + 32050 0.67 0.87076
Target:  5'- uGCGugUGCGcaaggcCGgGUUcGGCGAUGGGu -3'
miRNA:   3'- gCGCugAUGCu-----GCgCGA-UUGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 5006 0.68 0.836214
Target:  5'- gGCGGCcACGugGCGC-AAC--UGGGu -3'
miRNA:   3'- gCGCUGaUGCugCGCGaUUGcuAUCC- -5'
33059 5' -51 NC_007497.1 + 14301 0.68 0.839841
Target:  5'- gCGuCGGCUgucugaggccggagaGCGAUGCGagcaGAUGAUAGGg -3'
miRNA:   3'- -GC-GCUGA---------------UGCUGCGCga--UUGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 35180 0.66 0.893955
Target:  5'- uGCGGCUGCGGCGaaacugcagaaCGCacaGGCGGcggAGGu -3'
miRNA:   3'- gCGCUGAUGCUGC-----------GCGa--UUGCUa--UCC- -5'
33059 5' -51 NC_007497.1 + 4563 0.66 0.914635
Target:  5'- aGCGuCguuuucgACGACGCGCUGAUccaucGGGu -3'
miRNA:   3'- gCGCuGa------UGCUGCGCGAUUGcua--UCC- -5'
33059 5' -51 NC_007497.1 + 15441 0.68 0.836214
Target:  5'- aCGCGAUacagACGAuuguuuguaauCGCGCaauacaGGCGAUAGGc -3'
miRNA:   3'- -GCGCUGa---UGCU-----------GCGCGa-----UUGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 14112 0.68 0.836214
Target:  5'- uCGUGA--GCGugGCGauguCGAUGGGg -3'
miRNA:   3'- -GCGCUgaUGCugCGCgauuGCUAUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.