Results 1 - 20 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33068 | 5' | -48.6 | NC_007497.1 | + | 28025 | 1.13 | 0.002102 |
Target: 5'- cGAUCACCGAAAUCAUCGACCGCAAGCu -3' miRNA: 3'- -CUAGUGGCUUUAGUAGCUGGCGUUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 34920 | 0.7 | 0.828301 |
Target: 5'- uGAUCGCgcgCGAGA-CcgCGGCCGCGcagGGCg -3' miRNA: 3'- -CUAGUG---GCUUUaGuaGCUGGCGU---UCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 2756 | 0.69 | 0.837787 |
Target: 5'- cGAagACCGGGAUC-UCGcGCCGCAcggugaugaAGCa -3' miRNA: 3'- -CUagUGGCUUUAGuAGC-UGGCGU---------UCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 36036 | 0.66 | 0.964016 |
Target: 5'- gGAUaCGCgGAAG-CcgCGGCCGC-GGCg -3' miRNA: 3'- -CUA-GUGgCUUUaGuaGCUGGCGuUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 28595 | 0.74 | 0.618618 |
Target: 5'- aGUCGCCGGAcagccUCcauUCGACCGCGcGCg -3' miRNA: 3'- cUAGUGGCUUu----AGu--AGCUGGCGUuCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 585 | 0.73 | 0.665283 |
Target: 5'- cAUUACgcAGAUCGUCG-CCGCGAGCg -3' miRNA: 3'- cUAGUGgcUUUAGUAGCuGGCGUUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 25718 | 0.72 | 0.688455 |
Target: 5'- --aCAaCGGGAUCAUCGAaUCGCAAGUg -3' miRNA: 3'- cuaGUgGCUUUAGUAGCU-GGCGUUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 28726 | 0.72 | 0.711384 |
Target: 5'- cGAUCACCGGu----UCGAaggUCGCGAGCu -3' miRNA: 3'- -CUAGUGGCUuuaguAGCU---GGCGUUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 1880 | 0.72 | 0.722724 |
Target: 5'- gGAUCGCgCGGAuUC--CGACCGuCAAGCg -3' miRNA: 3'- -CUAGUG-GCUUuAGuaGCUGGC-GUUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 6210 | 0.7 | 0.808644 |
Target: 5'- cGAUgACCGGAuuuuggaggCGUgGGCgCGCGAGCg -3' miRNA: 3'- -CUAgUGGCUUua-------GUAgCUG-GCGUUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 14854 | 0.7 | 0.788153 |
Target: 5'- --cCGCCGAgcAGUCggCGACgaGCAAGCc -3' miRNA: 3'- cuaGUGGCU--UUAGuaGCUGg-CGUUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 15000 | 0.72 | 0.722724 |
Target: 5'- uGAUCAgCGccg-CGUCGAUCGCAAGa -3' miRNA: 3'- -CUAGUgGCuuuaGUAGCUGGCGUUCg -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 5073 | 0.76 | 0.471655 |
Target: 5'- aGGUCGCCGAGAaguUCGcUGACCacugGCGAGCg -3' miRNA: 3'- -CUAGUGGCUUU---AGUaGCUGG----CGUUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 23522 | 0.7 | 0.798496 |
Target: 5'- aGAUCGCCGAcAUgAaggCGGCCGCcgcucAGGCc -3' miRNA: 3'- -CUAGUGGCUuUAgUa--GCUGGCG-----UUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 30678 | 0.74 | 0.606956 |
Target: 5'- cGGUCACCGu-AUCgagcuauuugagGUCGACUGCAcAGCg -3' miRNA: 3'- -CUAGUGGCuuUAG------------UAGCUGGCGU-UCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 1051 | 0.72 | 0.711384 |
Target: 5'- -cUCACgGAug-CGUCGGCCGCGuacuGCu -3' miRNA: 3'- cuAGUGgCUuuaGUAGCUGGCGUu---CG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 40667 | 0.7 | 0.808644 |
Target: 5'- -cUCAUCGAAG-CGUCGAUgGCGcGCg -3' miRNA: 3'- cuAGUGGCUUUaGUAGCUGgCGUuCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 34781 | 0.69 | 0.837787 |
Target: 5'- -cUCGCUGAAaccgaaaaggGUCucgCGGCCGcCGAGCg -3' miRNA: 3'- cuAGUGGCUU----------UAGua-GCUGGC-GUUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 37681 | 0.74 | 0.618618 |
Target: 5'- -cUgGCCGAccaGAUCAUCGAUCGCGuggaaucgaccGGCa -3' miRNA: 3'- cuAgUGGCU---UUAGUAGCUGGCGU-----------UCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 1925 | 0.73 | 0.676893 |
Target: 5'- cGAUCAguuCCGAGAUgCAcCGGCCGCuGGUa -3' miRNA: 3'- -CUAGU---GGCUUUA-GUaGCUGGCGuUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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