Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33074 | 5' | -54.2 | NC_007497.1 | + | 38683 | 0.66 | 0.715553 |
Target: 5'- -uUAACGCGCGUGcGCUGuugC-GGCc -3' miRNA: 3'- cuGUUGCGCGCGCuCGACuuaGuCCG- -5' |
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33074 | 5' | -54.2 | NC_007497.1 | + | 4268 | 0.66 | 0.715553 |
Target: 5'- aGCGGCGUGUGCGucGCcGAucagcaCGGGCg -3' miRNA: 3'- cUGUUGCGCGCGCu-CGaCUua----GUCCG- -5' |
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33074 | 5' | -54.2 | NC_007497.1 | + | 14159 | 0.66 | 0.7265 |
Target: 5'- uGACAGCGCuuCGCaAGUucgcgGAcgCAGGCa -3' miRNA: 3'- -CUGUUGCGc-GCGcUCGa----CUuaGUCCG- -5' |
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33074 | 5' | -54.2 | NC_007497.1 | + | 32056 | 0.66 | 0.69341 |
Target: 5'- cGACGcuGCGUGUGCGcaaGGCcGggUUcGGCg -3' miRNA: 3'- -CUGU--UGCGCGCGC---UCGaCuuAGuCCG- -5' |
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33074 | 5' | -54.2 | NC_007497.1 | + | 34290 | 0.66 | 0.704519 |
Target: 5'- aGACggUGCGC-CGAucgucaCUGAcgaggAUCAGGCg -3' miRNA: 3'- -CUGuuGCGCGcGCUc-----GACU-----UAGUCCG- -5' |
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33074 | 5' | -54.2 | NC_007497.1 | + | 23236 | 0.66 | 0.704519 |
Target: 5'- uGACGA-GCGCGCGGGa-GAG-CuGGCg -3' miRNA: 3'- -CUGUUgCGCGCGCUCgaCUUaGuCCG- -5' |
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33074 | 5' | -54.2 | NC_007497.1 | + | 35633 | 0.66 | 0.671017 |
Target: 5'- cGCGAuCGCGCGCG-GCaUGGGcCGGGg -3' miRNA: 3'- cUGUU-GCGCGCGCuCG-ACUUaGUCCg -5' |
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33074 | 5' | -54.2 | NC_007497.1 | + | 30781 | 0.66 | 0.671017 |
Target: 5'- uGACAGCGCGuCGUGucgcGGCguAGUCGcGGCg -3' miRNA: 3'- -CUGUUGCGC-GCGC----UCGacUUAGU-CCG- -5' |
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33074 | 5' | -54.2 | NC_007497.1 | + | 33580 | 0.66 | 0.7265 |
Target: 5'- uGCAcggGCGCGUGCugcugcGCUGggUCAGaaaGCa -3' miRNA: 3'- cUGU---UGCGCGCGcu----CGACuuAGUC---CG- -5' |
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33074 | 5' | -54.2 | NC_007497.1 | + | 38621 | 0.66 | 0.704519 |
Target: 5'- aACAGCGCacGCGCGuuaAGCggcaguucgGuAAUCGGGCc -3' miRNA: 3'- cUGUUGCG--CGCGC---UCGa--------C-UUAGUCCG- -5' |
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33074 | 5' | -54.2 | NC_007497.1 | + | 6193 | 0.67 | 0.614557 |
Target: 5'- aGGCGugGgCGCGCGAGCgcGGUUAcGCg -3' miRNA: 3'- -CUGUugC-GCGCGCUCGacUUAGUcCG- -5' |
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33074 | 5' | -54.2 | NC_007497.1 | + | 19930 | 0.67 | 0.659757 |
Target: 5'- cGACGAC-CGCGaGGGUUGccgguuuccAUCAGGCg -3' miRNA: 3'- -CUGUUGcGCGCgCUCGACu--------UAGUCCG- -5' |
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33074 | 5' | -54.2 | NC_007497.1 | + | 37935 | 0.67 | 0.64847 |
Target: 5'- uACGGagauCGCGCGGGCgaucGAUCAGGUg -3' miRNA: 3'- cUGUUgc--GCGCGCUCGac--UUAGUCCG- -5' |
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33074 | 5' | -54.2 | NC_007497.1 | + | 16054 | 0.67 | 0.64847 |
Target: 5'- uGACAACGgguugaUGCGCGAa-UGGcgCGGGCg -3' miRNA: 3'- -CUGUUGC------GCGCGCUcgACUuaGUCCG- -5' |
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33074 | 5' | -54.2 | NC_007497.1 | + | 18520 | 0.67 | 0.637167 |
Target: 5'- -cCGACGauuCGCGAGC-GggUCgAGGCg -3' miRNA: 3'- cuGUUGCgc-GCGCUCGaCuuAG-UCCG- -5' |
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33074 | 5' | -54.2 | NC_007497.1 | + | 23269 | 0.67 | 0.626989 |
Target: 5'- gGGCGGC-UGCGaCGAGCUGGucgacacgcugcugCAGGCu -3' miRNA: 3'- -CUGUUGcGCGC-GCUCGACUua------------GUCCG- -5' |
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33074 | 5' | -54.2 | NC_007497.1 | + | 8195 | 0.67 | 0.614557 |
Target: 5'- aGACGACGCGCGaucGCgacuucgcUCAGGCc -3' miRNA: 3'- -CUGUUGCGCGCgcuCGacuu----AGUCCG- -5' |
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33074 | 5' | -54.2 | NC_007497.1 | + | 17584 | 0.67 | 0.659757 |
Target: 5'- uGCGGCGCGUGCaAGUUccgcgCGGGCg -3' miRNA: 3'- cUGUUGCGCGCGcUCGAcuua-GUCCG- -5' |
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33074 | 5' | -54.2 | NC_007497.1 | + | 33410 | 0.67 | 0.64847 |
Target: 5'- aGCAGCGgauCGCGC-AGCUGcgcGUCgAGGCg -3' miRNA: 3'- cUGUUGC---GCGCGcUCGACu--UAG-UCCG- -5' |
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33074 | 5' | -54.2 | NC_007497.1 | + | 19724 | 0.67 | 0.64847 |
Target: 5'- cGGCAuGC-CGUGCGGGC---AUCGGGCa -3' miRNA: 3'- -CUGU-UGcGCGCGCUCGacuUAGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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