miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33074 5' -54.2 NC_007497.1 + 1091 0.74 0.284836
Target:  5'- gGGCAGCGCGCGCGAugaucacugcacGgUGAAgcUCcGGCa -3'
miRNA:   3'- -CUGUUGCGCGCGCU------------CgACUU--AGuCCG- -5'
33074 5' -54.2 NC_007497.1 + 2034 0.69 0.536426
Target:  5'- gGGCGcccguGCGCGCGCGAaagaUGGGagAGGCa -3'
miRNA:   3'- -CUGU-----UGCGCGCGCUcg--ACUUagUCCG- -5'
33074 5' -54.2 NC_007497.1 + 3589 0.79 0.132173
Target:  5'- aGACGACGCGCGCGugaAGgUGAagGUCGcGGCg -3'
miRNA:   3'- -CUGUUGCGCGCGC---UCgACU--UAGU-CCG- -5'
33074 5' -54.2 NC_007497.1 + 4145 0.72 0.348648
Target:  5'- cGGgAAgGCGCGCGAGCUc-AUCGcGGCg -3'
miRNA:   3'- -CUgUUgCGCGCGCUCGAcuUAGU-CCG- -5'
33074 5' -54.2 NC_007497.1 + 4268 0.66 0.715553
Target:  5'- aGCGGCGUGUGCGucGCcGAucagcaCGGGCg -3'
miRNA:   3'- cUGUUGCGCGCGCu-CGaCUua----GUCCG- -5'
33074 5' -54.2 NC_007497.1 + 6193 0.67 0.614557
Target:  5'- aGGCGugGgCGCGCGAGCgcGGUUAcGCg -3'
miRNA:   3'- -CUGUugC-GCGCGCUCGacUUAGUcCG- -5'
33074 5' -54.2 NC_007497.1 + 8195 0.67 0.614557
Target:  5'- aGACGACGCGCGaucGCgacuucgcUCAGGCc -3'
miRNA:   3'- -CUGUUGCGCGCgcuCGacuu----AGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 9107 0.74 0.2634
Target:  5'- aGACuGGgGUGCGCGGGCUGcGGUgCAGGCc -3'
miRNA:   3'- -CUG-UUgCGCGCGCUCGAC-UUA-GUCCG- -5'
33074 5' -54.2 NC_007497.1 + 10164 0.68 0.580787
Target:  5'- cGGCAGCcuGCGCGCGcAGaUGGcUUGGGCa -3'
miRNA:   3'- -CUGUUG--CGCGCGC-UCgACUuAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 10913 0.7 0.451838
Target:  5'- gGGCGGCGaaCGUG-GAGCuaggaaUGGAUCAGGCg -3'
miRNA:   3'- -CUGUUGC--GCGCgCUCG------ACUUAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 14159 0.66 0.7265
Target:  5'- uGACAGCGCuuCGCaAGUucgcgGAcgCAGGCa -3'
miRNA:   3'- -CUGUUGCGc-GCGcUCGa----CUuaGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 14446 0.7 0.451838
Target:  5'- cGCAggGCGgGCGCG-GUUGA-UCAGGUg -3'
miRNA:   3'- cUGU--UGCgCGCGCuCGACUuAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 16054 0.67 0.64847
Target:  5'- uGACAACGgguugaUGCGCGAa-UGGcgCGGGCg -3'
miRNA:   3'- -CUGUUGC------GCGCGCUcgACUuaGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 17584 0.67 0.659757
Target:  5'- uGCGGCGCGUGCaAGUUccgcgCGGGCg -3'
miRNA:   3'- cUGUUGCGCGCGcUCGAcuua-GUCCG- -5'
33074 5' -54.2 NC_007497.1 + 18520 0.67 0.637167
Target:  5'- -cCGACGauuCGCGAGC-GggUCgAGGCg -3'
miRNA:   3'- cuGUUGCgc-GCGCUCGaCuuAG-UCCG- -5'
33074 5' -54.2 NC_007497.1 + 19724 0.67 0.64847
Target:  5'- cGGCAuGC-CGUGCGGGC---AUCGGGCa -3'
miRNA:   3'- -CUGU-UGcGCGCGCUCGacuUAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 19930 0.67 0.659757
Target:  5'- cGACGAC-CGCGaGGGUUGccgguuuccAUCAGGCg -3'
miRNA:   3'- -CUGUUGcGCGCgCUCGACu--------UAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 21404 0.67 0.659757
Target:  5'- -----aGCGacaGCGAGCUGAgccGUCcGGCg -3'
miRNA:   3'- cuguugCGCg--CGCUCGACU---UAGuCCG- -5'
33074 5' -54.2 NC_007497.1 + 22923 0.67 0.637167
Target:  5'- cGCAGCGCGCGCGAaC-GAu---GGCg -3'
miRNA:   3'- cUGUUGCGCGCGCUcGaCUuaguCCG- -5'
33074 5' -54.2 NC_007497.1 + 23236 0.66 0.704519
Target:  5'- uGACGA-GCGCGCGGGa-GAG-CuGGCg -3'
miRNA:   3'- -CUGUUgCGCGCGCUCgaCUUaGuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.