miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33074 5' -54.2 NC_007497.1 + 33082 1.13 0.000496
Target:  5'- cGACAACGCGCGCGAGCUGAAUCAGGCa -3'
miRNA:   3'- -CUGUUGCGCGCGCUCGACUUAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 3589 0.79 0.132173
Target:  5'- aGACGACGCGCGCGugaAGgUGAagGUCGcGGCg -3'
miRNA:   3'- -CUGUUGCGCGCGC---UCgACU--UAGU-CCG- -5'
33074 5' -54.2 NC_007497.1 + 36245 0.79 0.136005
Target:  5'- uGGCAACGagucuGCGCGAGCUGAucGUCAGcGUu -3'
miRNA:   3'- -CUGUUGCg----CGCGCUCGACU--UAGUC-CG- -5'
33074 5' -54.2 NC_007497.1 + 42458 0.78 0.156736
Target:  5'- -cCGGCGCG-GCGAGCUGAAUgGuGGCa -3'
miRNA:   3'- cuGUUGCGCgCGCUCGACUUAgU-CCG- -5'
33074 5' -54.2 NC_007497.1 + 34271 0.77 0.170509
Target:  5'- uGCGAgGCGCGCGAuGC-GAGUCuGGCg -3'
miRNA:   3'- cUGUUgCGCGCGCU-CGaCUUAGuCCG- -5'
33074 5' -54.2 NC_007497.1 + 23537 0.75 0.23688
Target:  5'- uGAuCAGCGCGCGCGAGaucgccgacaUGAAggcggccgccgcUCAGGCc -3'
miRNA:   3'- -CU-GUUGCGCGCGCUCg---------ACUU------------AGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 9107 0.74 0.2634
Target:  5'- aGACuGGgGUGCGCGGGCUGcGGUgCAGGCc -3'
miRNA:   3'- -CUG-UUgCGCGCGCUCGAC-UUA-GUCCG- -5'
33074 5' -54.2 NC_007497.1 + 1091 0.74 0.284836
Target:  5'- gGGCAGCGCGCGCGAugaucacugcacGgUGAAgcUCcGGCa -3'
miRNA:   3'- -CUGUUGCGCGCGCU------------CgACUU--AGuCCG- -5'
33074 5' -54.2 NC_007497.1 + 34729 0.73 0.315526
Target:  5'- cGACGcAgGCGCGCGAGCgcgccGAAcgAGGCg -3'
miRNA:   3'- -CUGU-UgCGCGCGCUCGa----CUUagUCCG- -5'
33074 5' -54.2 NC_007497.1 + 23470 0.73 0.323579
Target:  5'- cGGCGAUcuCGCGCGcGCUGA-UCAGGUg -3'
miRNA:   3'- -CUGUUGc-GCGCGCuCGACUuAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 4145 0.72 0.348648
Target:  5'- cGGgAAgGCGCGCGAGCUc-AUCGcGGCg -3'
miRNA:   3'- -CUgUUgCGCGCGCUCGAcuUAGU-CCG- -5'
33074 5' -54.2 NC_007497.1 + 42172 0.72 0.375073
Target:  5'- aGCAGCGCGCGC-AGUUGcAUCAaGCu -3'
miRNA:   3'- cUGUUGCGCGCGcUCGACuUAGUcCG- -5'
33074 5' -54.2 NC_007497.1 + 23773 0.71 0.389709
Target:  5'- cACGGCgGC-CGCGAGCUGGuacguguggcccuUCAGGCu -3'
miRNA:   3'- cUGUUG-CGcGCGCUCGACUu------------AGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 33826 0.71 0.401874
Target:  5'- uGCGGgGCGCGCGGaugcauacaagucGCUGGAaaAGGCg -3'
miRNA:   3'- cUGUUgCGCGCGCU-------------CGACUUagUCCG- -5'
33074 5' -54.2 NC_007497.1 + 35424 0.71 0.431832
Target:  5'- cGAcCGGCGCcaGCGCGaAGCUGucUCAaGGCa -3'
miRNA:   3'- -CU-GUUGCG--CGCGC-UCGACuuAGU-CCG- -5'
33074 5' -54.2 NC_007497.1 + 10913 0.7 0.451838
Target:  5'- gGGCGGCGaaCGUG-GAGCuaggaaUGGAUCAGGCg -3'
miRNA:   3'- -CUGUUGC--GCGCgCUCG------ACUUAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 14446 0.7 0.451838
Target:  5'- cGCAggGCGgGCGCG-GUUGA-UCAGGUg -3'
miRNA:   3'- cUGU--UGCgCGCGCuCGACUuAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 34493 0.7 0.482767
Target:  5'- aGCAGCGCGaCGuCGAGuUUGAucgacaugCAGGCg -3'
miRNA:   3'- cUGUUGCGC-GC-GCUC-GACUua------GUCCG- -5'
33074 5' -54.2 NC_007497.1 + 33739 0.69 0.525511
Target:  5'- cGACAAucUGaCGCGCGAGCucgcgcugaUGAAUCAG-Ca -3'
miRNA:   3'- -CUGUU--GC-GCGCGCUCG---------ACUUAGUCcG- -5'
33074 5' -54.2 NC_007497.1 + 28574 0.69 0.536426
Target:  5'- cGACcGCGCGCGCGAagguGCUcGAcAUCAucGGUg -3'
miRNA:   3'- -CUGuUGCGCGCGCU----CGA-CU-UAGU--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.