miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33074 5' -54.2 NC_007497.1 + 34271 0.77 0.170509
Target:  5'- uGCGAgGCGCGCGAuGC-GAGUCuGGCg -3'
miRNA:   3'- cUGUUgCGCGCGCU-CGaCUUAGuCCG- -5'
33074 5' -54.2 NC_007497.1 + 14159 0.66 0.7265
Target:  5'- uGACAGCGCuuCGCaAGUucgcgGAcgCAGGCa -3'
miRNA:   3'- -CUGUUGCGc-GCGcUCGa----CUuaGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 4268 0.66 0.715553
Target:  5'- aGCGGCGUGUGCGucGCcGAucagcaCGGGCg -3'
miRNA:   3'- cUGUUGCGCGCGCu-CGaCUua----GUCCG- -5'
33074 5' -54.2 NC_007497.1 + 38621 0.66 0.704519
Target:  5'- aACAGCGCacGCGCGuuaAGCggcaguucgGuAAUCGGGCc -3'
miRNA:   3'- cUGUUGCG--CGCGC---UCGa--------C-UUAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 16054 0.67 0.64847
Target:  5'- uGACAACGgguugaUGCGCGAa-UGGcgCGGGCg -3'
miRNA:   3'- -CUGUUGC------GCGCGCUcgACUuaGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 18520 0.67 0.637167
Target:  5'- -cCGACGauuCGCGAGC-GggUCgAGGCg -3'
miRNA:   3'- cuGUUGCgc-GCGCUCGaCuuAG-UCCG- -5'
33074 5' -54.2 NC_007497.1 + 23269 0.67 0.626989
Target:  5'- gGGCGGC-UGCGaCGAGCUGGucgacacgcugcugCAGGCu -3'
miRNA:   3'- -CUGUUGcGCGC-GCUCGACUua------------GUCCG- -5'
33074 5' -54.2 NC_007497.1 + 8195 0.67 0.614557
Target:  5'- aGACGACGCGCGaucGCgacuucgcUCAGGCc -3'
miRNA:   3'- -CUGUUGCGCGCgcuCGacuu----AGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 39945 0.68 0.603271
Target:  5'- cGGCugGACGCG-GCaGAGCUGGcgCAucGGCg -3'
miRNA:   3'- -CUG--UUGCGCgCG-CUCGACUuaGU--CCG- -5'
33074 5' -54.2 NC_007497.1 + 1091 0.74 0.284836
Target:  5'- gGGCAGCGCGCGCGAugaucacugcacGgUGAAgcUCcGGCa -3'
miRNA:   3'- -CUGUUGCGCGCGCU------------CgACUU--AGuCCG- -5'
33074 5' -54.2 NC_007497.1 + 23470 0.73 0.323579
Target:  5'- cGGCGAUcuCGCGCGcGCUGA-UCAGGUg -3'
miRNA:   3'- -CUGUUGc-GCGCGCuCGACUuAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 42172 0.72 0.375073
Target:  5'- aGCAGCGCGCGC-AGUUGcAUCAaGCu -3'
miRNA:   3'- cUGUUGCGCGCGcUCGACuUAGUcCG- -5'
33074 5' -54.2 NC_007497.1 + 23773 0.71 0.389709
Target:  5'- cACGGCgGC-CGCGAGCUGGuacguguggcccuUCAGGCu -3'
miRNA:   3'- cUGUUG-CGcGCGCUCGACUu------------AGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 10913 0.7 0.451838
Target:  5'- gGGCGGCGaaCGUG-GAGCuaggaaUGGAUCAGGCg -3'
miRNA:   3'- -CUGUUGC--GCGCgCUCG------ACUUAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 33179 0.68 0.599889
Target:  5'- cACGGCGCgaucguaggccGCGCGAaucgacgccugaucGC-GGAUCAGGCu -3'
miRNA:   3'- cUGUUGCG-----------CGCGCU--------------CGaCUUAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 33580 0.66 0.7265
Target:  5'- uGCAcggGCGCGUGCugcugcGCUGggUCAGaaaGCa -3'
miRNA:   3'- cUGU---UGCGCGCGcu----CGACuuAGUC---CG- -5'
33074 5' -54.2 NC_007497.1 + 3589 0.79 0.132173
Target:  5'- aGACGACGCGCGCGugaAGgUGAagGUCGcGGCg -3'
miRNA:   3'- -CUGUUGCGCGCGC---UCgACU--UAGU-CCG- -5'
33074 5' -54.2 NC_007497.1 + 36245 0.79 0.136005
Target:  5'- uGGCAACGagucuGCGCGAGCUGAucGUCAGcGUu -3'
miRNA:   3'- -CUGUUGCg----CGCGCUCGACU--UAGUC-CG- -5'
33074 5' -54.2 NC_007497.1 + 42458 0.78 0.156736
Target:  5'- -cCGGCGCG-GCGAGCUGAAUgGuGGCa -3'
miRNA:   3'- cuGUUGCGCgCGCUCGACUUAgU-CCG- -5'
33074 5' -54.2 NC_007497.1 + 23537 0.75 0.23688
Target:  5'- uGAuCAGCGCGCGCGAGaucgccgacaUGAAggcggccgccgcUCAGGCc -3'
miRNA:   3'- -CU-GUUGCGCGCGCUCg---------ACUU------------AGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.