miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33078 3' -53.7 NC_007497.1 + 7959 0.66 0.755093
Target:  5'- uGGCGGUGagugcagcagacCUCGCcGAGugccgGCUGAGAAGc -3'
miRNA:   3'- gCCGCCGC------------GAGCGaCUU-----UGGCUUUUC- -5'
33078 3' -53.7 NC_007497.1 + 37017 0.66 0.755093
Target:  5'- uCGGC-GCGC-CGCUGAc-CCGAAc-- -3'
miRNA:   3'- -GCCGcCGCGaGCGACUuuGGCUUuuc -5'
33078 3' -53.7 NC_007497.1 + 21450 0.66 0.754036
Target:  5'- aCGGC-GCGCUCGagaaCUGGAAacgcaacUCGAAGAGc -3'
miRNA:   3'- -GCCGcCGCGAGC----GACUUU-------GGCUUUUC- -5'
33078 3' -53.7 NC_007497.1 + 36835 0.66 0.733724
Target:  5'- aGGCGGCGggCGUc-GAGCCGGAc-- -3'
miRNA:   3'- gCCGCCGCgaGCGacUUUGGCUUuuc -5'
33078 3' -53.7 NC_007497.1 + 26053 0.66 0.733724
Target:  5'- cCGGCGuGUGgUCGCUGcAGucggcgauuGCCGAGGGc -3'
miRNA:   3'- -GCCGC-CGCgAGCGAC-UU---------UGGCUUUUc -5'
33078 3' -53.7 NC_007497.1 + 16479 0.66 0.733724
Target:  5'- gCGGCGGCcuGCUCGaaGGuauCCGGAu-- -3'
miRNA:   3'- -GCCGCCG--CGAGCgaCUuu-GGCUUuuc -5'
33078 3' -53.7 NC_007497.1 + 35602 0.66 0.722873
Target:  5'- uCGGagcugaaGGCGCUCGCcGAGgacggcaagcucACCGucGAGa -3'
miRNA:   3'- -GCCg------CCGCGAGCGaCUU------------UGGCuuUUC- -5'
33078 3' -53.7 NC_007497.1 + 24261 0.67 0.711927
Target:  5'- -cGUGGCGUcgUCGCUGAcGCUGAc--- -3'
miRNA:   3'- gcCGCCGCG--AGCGACUuUGGCUuuuc -5'
33078 3' -53.7 NC_007497.1 + 4175 0.67 0.700899
Target:  5'- -uGCGGUGCgcgaCGCgcGGGCCGGAAGGa -3'
miRNA:   3'- gcCGCCGCGa---GCGacUUUGGCUUUUC- -5'
33078 3' -53.7 NC_007497.1 + 28616 0.67 0.700899
Target:  5'- gCGGCGGCgGCggCGgUGGAgagucGCCGGAcAGc -3'
miRNA:   3'- -GCCGCCG-CGa-GCgACUU-----UGGCUUuUC- -5'
33078 3' -53.7 NC_007497.1 + 32327 0.67 0.689801
Target:  5'- uGGCGGCaGCggUGCUGguGCUGGcgGGc -3'
miRNA:   3'- gCCGCCG-CGa-GCGACuuUGGCUuuUC- -5'
33078 3' -53.7 NC_007497.1 + 25767 0.67 0.688688
Target:  5'- uCGGacgGGCGCacguacaUCGCUGGAAUCGGu--- -3'
miRNA:   3'- -GCCg--CCGCG-------AGCGACUUUGGCUuuuc -5'
33078 3' -53.7 NC_007497.1 + 7360 0.67 0.678644
Target:  5'- gGGCGGCGaaCUUGCUGcGAguaucggcAUCGAGGGGa -3'
miRNA:   3'- gCCGCCGC--GAGCGAC-UU--------UGGCUUUUC- -5'
33078 3' -53.7 NC_007497.1 + 6615 0.67 0.678644
Target:  5'- gCGGUGGCGC-CGaUGAAGuuGAAu-- -3'
miRNA:   3'- -GCCGCCGCGaGCgACUUUggCUUuuc -5'
33078 3' -53.7 NC_007497.1 + 29568 0.68 0.644943
Target:  5'- -aGCGGCGCgacauaucCGCUGGGuCCGAAu-- -3'
miRNA:   3'- gcCGCCGCGa-------GCGACUUuGGCUUuuc -5'
33078 3' -53.7 NC_007497.1 + 41918 0.68 0.63367
Target:  5'- gGGCGGCGCcaUCGa-GGuuCCGAAGGa -3'
miRNA:   3'- gCCGCCGCG--AGCgaCUuuGGCUUUUc -5'
33078 3' -53.7 NC_007497.1 + 37983 0.68 0.611129
Target:  5'- gCGGcCGGCGUucgacgcgucgaUCGCUcAGGCCGAGGGc -3'
miRNA:   3'- -GCC-GCCGCG------------AGCGAcUUUGGCUUUUc -5'
33078 3' -53.7 NC_007497.1 + 30061 0.68 0.607753
Target:  5'- aCGGCGGCuuuuugugcgacacGCUCGCau-AGCCGAc--- -3'
miRNA:   3'- -GCCGCCG--------------CGAGCGacuUUGGCUuuuc -5'
33078 3' -53.7 NC_007497.1 + 44319 0.69 0.577485
Target:  5'- gCGGCGGUGC-CGCcgGAgcaAACCGGc--- -3'
miRNA:   3'- -GCCGCCGCGaGCGa-CU---UUGGCUuuuc -5'
33078 3' -53.7 NC_007497.1 + 32864 0.7 0.533325
Target:  5'- uGGCgcgagccgGGCGCUCGCUcuguaucagGAGuccGCCGAGAAc -3'
miRNA:   3'- gCCG--------CCGCGAGCGA---------CUU---UGGCUUUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.