miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33078 5' -57.3 NC_007497.1 + 36854 0.66 0.587584
Target:  5'- uGGCuCGauCCGcuGCGCGAGGcGGCGggCGu -3'
miRNA:   3'- -CCG-GC--GGCu-CGCGCUUCaUCGCuaGC- -5'
33078 5' -57.3 NC_007497.1 + 26653 0.66 0.587584
Target:  5'- gGGUCGCUGuuGCGCaGAcg-GGCGGUCu -3'
miRNA:   3'- -CCGGCGGCu-CGCG-CUucaUCGCUAGc -5'
33078 5' -57.3 NC_007497.1 + 6188 0.66 0.587584
Target:  5'- uGGgCGCgCGAGCGCGGuuacGCGcuuGUCGa -3'
miRNA:   3'- -CCgGCG-GCUCGCGCUucauCGC---UAGC- -5'
33078 5' -57.3 NC_007497.1 + 32892 0.66 0.576758
Target:  5'- cGGCucaCGuuGAGCGCGAu-UGGCGuGUUGg -3'
miRNA:   3'- -CCG---GCggCUCGCGCUucAUCGC-UAGC- -5'
33078 5' -57.3 NC_007497.1 + 15463 0.66 0.565977
Target:  5'- cGCUGUCGcauucGCGUacGGAGUcGCGAUCGg -3'
miRNA:   3'- cCGGCGGCu----CGCG--CUUCAuCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 44652 0.66 0.555248
Target:  5'- cGGCCGCCGAugcuGuCGCGggGcUGuagccugccGCGAUgGc -3'
miRNA:   3'- -CCGGCGGCU----C-GCGCuuC-AU---------CGCUAgC- -5'
33078 5' -57.3 NC_007497.1 + 12729 0.66 0.552041
Target:  5'- cGGCCggcucuacgguguaGCCGAGaaaCGggGUAGCGccCGa -3'
miRNA:   3'- -CCGG--------------CGGCUCgc-GCuuCAUCGCuaGC- -5'
33078 5' -57.3 NC_007497.1 + 23504 0.66 0.54458
Target:  5'- cGGCCGCCGcucaGGCccagGCGAA--GGCGGUa- -3'
miRNA:   3'- -CCGGCGGC----UCG----CGCUUcaUCGCUAgc -5'
33078 5' -57.3 NC_007497.1 + 42069 0.66 0.54458
Target:  5'- aGuuGCCGGcGCGCGAGGUGuuucaccuGCGugacuuGUCGa -3'
miRNA:   3'- cCggCGGCU-CGCGCUUCAU--------CGC------UAGC- -5'
33078 5' -57.3 NC_007497.1 + 37954 0.66 0.54458
Target:  5'- aGGCCGa-GGGCGCaauucguacGGAGaucgcgcgGGCGAUCGa -3'
miRNA:   3'- -CCGGCggCUCGCG---------CUUCa-------UCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 6309 0.67 0.53398
Target:  5'- cGGCaUGUCGGGCGCGAugcuGCGAa-- -3'
miRNA:   3'- -CCG-GCGGCUCGCGCUucauCGCUagc -5'
33078 5' -57.3 NC_007497.1 + 26098 0.67 0.513007
Target:  5'- uGGCCGgCGA-CGCGGaagAGUAcGCGggCGa -3'
miRNA:   3'- -CCGGCgGCUcGCGCU---UCAU-CGCuaGC- -5'
33078 5' -57.3 NC_007497.1 + 22303 0.67 0.513007
Target:  5'- uGCgGCCGAGUuCGGAGUuuGGCaGUCGc -3'
miRNA:   3'- cCGgCGGCUCGcGCUUCA--UCGcUAGC- -5'
33078 5' -57.3 NC_007497.1 + 14856 0.67 0.502648
Target:  5'- uGCCGCCGAGCagucgGCGAcg-AGCaagccagacgGAUCGa -3'
miRNA:   3'- cCGGCGGCUCG-----CGCUucaUCG----------CUAGC- -5'
33078 5' -57.3 NC_007497.1 + 24827 0.67 0.502648
Target:  5'- gGGCCGCCaAGCGC-----AGUGAUCu -3'
miRNA:   3'- -CCGGCGGcUCGCGcuucaUCGCUAGc -5'
33078 5' -57.3 NC_007497.1 + 36667 0.67 0.48932
Target:  5'- cGGUCGCCGAgGCGUacgggccggcacacGAucgGGUggucacgaaGGCGAUCGa -3'
miRNA:   3'- -CCGGCGGCU-CGCG--------------CU---UCA---------UCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 37766 0.67 0.482212
Target:  5'- gGGCCGCCGAacucGCGaCGGAcacGUAGCcuUUGg -3'
miRNA:   3'- -CCGGCGGCU----CGC-GCUU---CAUCGcuAGC- -5'
33078 5' -57.3 NC_007497.1 + 34738 0.68 0.462186
Target:  5'- cGCCGCCGcguAGCGCGucugauCGAUCGu -3'
miRNA:   3'- cCGGCGGC---UCGCGCuucaucGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 8281 0.68 0.452338
Target:  5'- aGGCCcagCGAGgccugaGCGAAGUcGCGAUCGc -3'
miRNA:   3'- -CCGGcg-GCUCg-----CGCUUCAuCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 26776 0.68 0.452338
Target:  5'- cGGCCGCUGcugaaucuGCGCGccGUcGuCGAUCGc -3'
miRNA:   3'- -CCGGCGGCu-------CGCGCuuCAuC-GCUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.