Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33097 | 3' | -57.1 | NC_007497.1 | + | 2209 | 0.66 | 0.562708 |
Target: 5'- uAGCACgGCU--CGCcacGGCaGGCCGCCa -3' miRNA: 3'- cUCGUGgUGAauGCGc--CCG-CUGGUGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 23479 | 0.66 | 0.547594 |
Target: 5'- -cGCGCgCGCUgaucaggugcacgACGCcGGCGcCCGCCg -3' miRNA: 3'- cuCGUG-GUGAa------------UGCGcCCGCuGGUGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 42067 | 0.66 | 0.530482 |
Target: 5'- ---uGCCACguugACGUGaGGCGGCCuuuuGCCg -3' miRNA: 3'- cucgUGGUGaa--UGCGC-CCGCUGG----UGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 34489 | 0.66 | 0.529419 |
Target: 5'- aAGCGCCACcgugccgACGgucgucaggaugcCGGGCagcccgccGACCACCg -3' miRNA: 3'- cUCGUGGUGaa-----UGC-------------GCCCG--------CUGGUGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 8013 | 0.66 | 0.562709 |
Target: 5'- -cGCugCGCgagGCgGCGGGCGuCgaGCCg -3' miRNA: 3'- cuCGugGUGaa-UG-CGCCCGCuGg-UGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 6909 | 0.66 | 0.584486 |
Target: 5'- aGGGCGCaauucgUACggagaucGCGCGGGCGAUCgAUCa -3' miRNA: 3'- -CUCGUG------GUGaa-----UGCGCCCGCUGG-UGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 42593 | 0.66 | 0.551901 |
Target: 5'- cGAGCcguGCUAUUUGCGCGugcccGGUGuCUGCCg -3' miRNA: 3'- -CUCG---UGGUGAAUGCGC-----CCGCuGGUGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 37154 | 0.66 | 0.561625 |
Target: 5'- --uCGCCGCUUGCaCGGGCcgugcggagaagcGACUGCCc -3' miRNA: 3'- cucGUGGUGAAUGcGCCCG-------------CUGGUGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 1700 | 0.66 | 0.529419 |
Target: 5'- gGAGCGCCGCaaagagaUUGCGCcGGCGcuUCACg -3' miRNA: 3'- -CUCGUGGUG-------AAUGCGcCCGCu-GGUGg -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 40388 | 0.66 | 0.583392 |
Target: 5'- cAGCGCCA---AC-CGGGCccgucagGGCCGCCg -3' miRNA: 3'- cUCGUGGUgaaUGcGCCCG-------CUGGUGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 8610 | 0.66 | 0.584485 |
Target: 5'- -cGCAgCCACacgAC-CGGGCGGCCgacgcGCCc -3' miRNA: 3'- cuCGU-GGUGaa-UGcGCCCGCUGG-----UGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 14104 | 0.66 | 0.584485 |
Target: 5'- -uGCugCGUggACGCcGGCGGCCugCu -3' miRNA: 3'- cuCGugGUGaaUGCGcCCGCUGGugG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 4570 | 0.67 | 0.519886 |
Target: 5'- cGAGCGCCGCgucuUGCGu-CGAuCCGCCg -3' miRNA: 3'- -CUCGUGGUGaau-GCGCccGCU-GGUGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 200 | 0.67 | 0.519886 |
Target: 5'- gGAGCcgucugucGCCGCggUGCGCGacgauGUGAUCGCCg -3' miRNA: 3'- -CUCG--------UGGUGa-AUGCGCc----CGCUGGUGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 16068 | 0.67 | 0.505194 |
Target: 5'- -uGCGCgAaugGCGCGGGCGcgucuggcucaauCCGCCg -3' miRNA: 3'- cuCGUGgUgaaUGCGCCCGCu------------GGUGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 35712 | 0.67 | 0.48248 |
Target: 5'- cAGCGCCACcgccUUGCugaucgucucgaccaGCGGGCcGACUugCu -3' miRNA: 3'- cUCGUGGUG----AAUG---------------CGCCCG-CUGGugG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 21324 | 0.67 | 0.519886 |
Target: 5'- cAGCGCgCGCgagauCGCcgacaugaaGGCGGCCGCCg -3' miRNA: 3'- cUCGUG-GUGaau--GCGc--------CCGCUGGUGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 33177 | 0.67 | 0.468286 |
Target: 5'- uGGGCGCCGCa-AUGCGGuaGCagcucaucuGGCCGCCa -3' miRNA: 3'- -CUCGUGGUGaaUGCGCC--CG---------CUGGUGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 29037 | 0.67 | 0.513569 |
Target: 5'- cGAGCAcCCACcgaugACGCcgguggagaaaagcgGGGCGAaacuuCCGCCc -3' miRNA: 3'- -CUCGU-GGUGaa---UGCG---------------CCCGCU-----GGUGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 13611 | 0.68 | 0.448387 |
Target: 5'- uGAG-GCCACUgaggaagaGCGGGCcgccgcaugGGCCGCCg -3' miRNA: 3'- -CUCgUGGUGAaug-----CGCCCG---------CUGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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