miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33097 3' -57.1 NC_007497.1 + 37154 0.66 0.561625
Target:  5'- --uCGCCGCUUGCaCGGGCcgugcggagaagcGACUGCCc -3'
miRNA:   3'- cucGUGGUGAAUGcGCCCG-------------CUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 13611 0.68 0.448387
Target:  5'- uGAG-GCCACUgaggaagaGCGGGCcgccgcaugGGCCGCCg -3'
miRNA:   3'- -CUCgUGGUGAaug-----CGCCCG---------CUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 35712 0.67 0.48248
Target:  5'- cAGCGCCACcgccUUGCugaucgucucgaccaGCGGGCcGACUugCu -3'
miRNA:   3'- cUCGUGGUG----AAUG---------------CGCCCG-CUGGugG- -5'
33097 3' -57.1 NC_007497.1 + 16068 0.67 0.505194
Target:  5'- -uGCGCgAaugGCGCGGGCGcgucuggcucaauCCGCCg -3'
miRNA:   3'- cuCGUGgUgaaUGCGCCCGCu------------GGUGG- -5'
33097 3' -57.1 NC_007497.1 + 200 0.67 0.519886
Target:  5'- gGAGCcgucugucGCCGCggUGCGCGacgauGUGAUCGCCg -3'
miRNA:   3'- -CUCG--------UGGUGa-AUGCGCc----CGCUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 4570 0.67 0.519886
Target:  5'- cGAGCGCCGCgucuUGCGu-CGAuCCGCCg -3'
miRNA:   3'- -CUCGUGGUGaau-GCGCccGCU-GGUGG- -5'
33097 3' -57.1 NC_007497.1 + 34489 0.66 0.529419
Target:  5'- aAGCGCCACcgugccgACGgucgucaggaugcCGGGCagcccgccGACCACCg -3'
miRNA:   3'- cUCGUGGUGaa-----UGC-------------GCCCG--------CUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 42067 0.66 0.530482
Target:  5'- ---uGCCACguugACGUGaGGCGGCCuuuuGCCg -3'
miRNA:   3'- cucgUGGUGaa--UGCGC-CCGCUGG----UGG- -5'
33097 3' -57.1 NC_007497.1 + 23479 0.66 0.547594
Target:  5'- -cGCGCgCGCUgaucaggugcacgACGCcGGCGcCCGCCg -3'
miRNA:   3'- cuCGUG-GUGAa------------UGCGcCCGCuGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 33459 0.68 0.428966
Target:  5'- -cGCGCgACcUGCGCGGcCGACUgcGCCa -3'
miRNA:   3'- cuCGUGgUGaAUGCGCCcGCUGG--UGG- -5'
33097 3' -57.1 NC_007497.1 + 24512 0.68 0.428966
Target:  5'- uGGCGCUGCguacGCGCGGGauuGCCACg -3'
miRNA:   3'- cUCGUGGUGaa--UGCGCCCgc-UGGUGg -5'
33097 3' -57.1 NC_007497.1 + 34686 0.69 0.410049
Target:  5'- cGAuCGCUACUU-CGCGcucGGCGGCCGCg -3'
miRNA:   3'- -CUcGUGGUGAAuGCGC---CCGCUGGUGg -5'
33097 3' -57.1 NC_007497.1 + 34569 0.85 0.028441
Target:  5'- uGAGCGa-GCcUGCGCGGGCGGCCGCCg -3'
miRNA:   3'- -CUCGUggUGaAUGCGCCCGCUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 2443 0.78 0.099358
Target:  5'- -uGCGCCGCUgggcguuCGCGcGGCGACgCGCCa -3'
miRNA:   3'- cuCGUGGUGAau-----GCGC-CCGCUG-GUGG- -5'
33097 3' -57.1 NC_007497.1 + 27128 0.73 0.203925
Target:  5'- -uGCGCCGCcccgccUUGCGCGGaucggcaauaGCGAUCACCu -3'
miRNA:   3'- cuCGUGGUG------AAUGCGCC----------CGCUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 27060 0.71 0.271738
Target:  5'- cGGCGCCACU---GCGGGCG-CCuuguCCa -3'
miRNA:   3'- cUCGUGGUGAaugCGCCCGCuGGu---GG- -5'
33097 3' -57.1 NC_007497.1 + 3382 0.71 0.278729
Target:  5'- -cGCACUGC--GCGCGGGCGAUaUGCCu -3'
miRNA:   3'- cuCGUGGUGaaUGCGCCCGCUG-GUGG- -5'
33097 3' -57.1 NC_007497.1 + 23743 0.71 0.293137
Target:  5'- -cGCACCGCUgccgacguugUAUGCGaagcucacGGCGGCCGCg -3'
miRNA:   3'- cuCGUGGUGA----------AUGCGC--------CCGCUGGUGg -5'
33097 3' -57.1 NC_007497.1 + 29374 0.7 0.33982
Target:  5'- cGAGCGCCACgu-CGCGGcCGACguCg -3'
miRNA:   3'- -CUCGUGGUGaauGCGCCcGCUGguGg -5'
33097 3' -57.1 NC_007497.1 + 2523 0.69 0.373818
Target:  5'- cGGUccuGCCACUucugcccgggcgUGCGCGccGGCGGCCGCg -3'
miRNA:   3'- cUCG---UGGUGA------------AUGCGC--CCGCUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.