miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33097 3' -57.1 NC_007497.1 + 200 0.67 0.519886
Target:  5'- gGAGCcgucugucGCCGCggUGCGCGacgauGUGAUCGCCg -3'
miRNA:   3'- -CUCG--------UGGUGa-AUGCGCc----CGCUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 281 0.97 0.004107
Target:  5'- cGAGCACCACUUcaGCGGGCGACCACCc -3'
miRNA:   3'- -CUCGUGGUGAAugCGCCCGCUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 483 0.71 0.293137
Target:  5'- cGGCACCGC---CGCGGuuGAUCGCCa -3'
miRNA:   3'- cUCGUGGUGaauGCGCCcgCUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 1700 0.66 0.529419
Target:  5'- gGAGCGCCGCaaagagaUUGCGCcGGCGcuUCACg -3'
miRNA:   3'- -CUCGUGGUG-------AAUGCGcCCGCu-GGUGg -5'
33097 3' -57.1 NC_007497.1 + 2209 0.66 0.562708
Target:  5'- uAGCACgGCU--CGCcacGGCaGGCCGCCa -3'
miRNA:   3'- cUCGUGgUGAauGCGc--CCG-CUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 2443 0.78 0.099358
Target:  5'- -uGCGCCGCUgggcguuCGCGcGGCGACgCGCCa -3'
miRNA:   3'- cuCGUGGUGAau-----GCGC-CCGCUG-GUGG- -5'
33097 3' -57.1 NC_007497.1 + 2523 0.69 0.373818
Target:  5'- cGGUccuGCCACUucugcccgggcgUGCGCGccGGCGGCCGCg -3'
miRNA:   3'- cUCG---UGGUGA------------AUGCGC--CCGCUGGUGg -5'
33097 3' -57.1 NC_007497.1 + 2901 0.68 0.455299
Target:  5'- -cGCGCCGCUUcacggacguuccgaACuggcgugaugGCGGGCGgcGCCAUCg -3'
miRNA:   3'- cuCGUGGUGAA--------------UG----------CGCCCGC--UGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 3330 0.7 0.348105
Target:  5'- aGGGCGCgCugUUGCGCGGcacgcugaaCGACCaaGCCg -3'
miRNA:   3'- -CUCGUG-GugAAUGCGCCc--------GCUGG--UGG- -5'
33097 3' -57.1 NC_007497.1 + 3382 0.71 0.278729
Target:  5'- -cGCACUGC--GCGCGGGCGAUaUGCCu -3'
miRNA:   3'- cuCGUGGUGaaUGCGCCCGCUG-GUGG- -5'
33097 3' -57.1 NC_007497.1 + 4570 0.67 0.519886
Target:  5'- cGAGCGCCGCgucuUGCGu-CGAuCCGCCg -3'
miRNA:   3'- -CUCGUGGUGaau-GCGCccGCU-GGUGG- -5'
33097 3' -57.1 NC_007497.1 + 6909 0.66 0.584486
Target:  5'- aGGGCGCaauucgUACggagaucGCGCGGGCGAUCgAUCa -3'
miRNA:   3'- -CUCGUG------GUGaa-----UGCGCCCGCUGG-UGG- -5'
33097 3' -57.1 NC_007497.1 + 7812 0.72 0.26489
Target:  5'- cGGCGCCGCcg--GCGGGCuGAUCACUg -3'
miRNA:   3'- cUCGUGGUGaaugCGCCCG-CUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 8013 0.66 0.562709
Target:  5'- -cGCugCGCgagGCgGCGGGCGuCgaGCCg -3'
miRNA:   3'- cuCGugGUGaa-UG-CGCCCGCuGg-UGG- -5'
33097 3' -57.1 NC_007497.1 + 8610 0.66 0.584485
Target:  5'- -cGCAgCCACacgAC-CGGGCGGCCgacgcGCCc -3'
miRNA:   3'- cuCGU-GGUGaa-UGcGCCCGCUGG-----UGG- -5'
33097 3' -57.1 NC_007497.1 + 9163 0.69 0.38267
Target:  5'- -cGgGCCAgUUGCGCGGGCagGACCu-- -3'
miRNA:   3'- cuCgUGGUgAAUGCGCCCG--CUGGugg -5'
33097 3' -57.1 NC_007497.1 + 10156 0.77 0.108179
Target:  5'- aGGCGCCAC---CGC-GGCGACCGCCg -3'
miRNA:   3'- cUCGUGGUGaauGCGcCCGCUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 10195 0.75 0.155505
Target:  5'- gGAGCguGCCGCgguCGCGcaaacGGCGGCCGCCc -3'
miRNA:   3'- -CUCG--UGGUGaauGCGC-----CCGCUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 11378 0.68 0.438615
Target:  5'- uGGC-CCAUcggACGCGGGCGGgCGgCg -3'
miRNA:   3'- cUCGuGGUGaa-UGCGCCCGCUgGUgG- -5'
33097 3' -57.1 NC_007497.1 + 12332 0.69 0.400788
Target:  5'- cGGGUuCCAuCUUGCGaCcGGCGGCCACg -3'
miRNA:   3'- -CUCGuGGU-GAAUGC-GcCCGCUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.