miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33097 3' -57.1 NC_007497.1 + 281 0.97 0.004107
Target:  5'- cGAGCACCACUUcaGCGGGCGACCACCc -3'
miRNA:   3'- -CUCGUGGUGAAugCGCCCGCUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 34569 0.85 0.028441
Target:  5'- uGAGCGa-GCcUGCGCGGGCGGCCGCCg -3'
miRNA:   3'- -CUCGUggUGaAUGCGCCCGCUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 27571 0.79 0.079045
Target:  5'- cGAGCGuCUGCcUGCGCGGGCGGCUGCg -3'
miRNA:   3'- -CUCGU-GGUGaAUGCGCCCGCUGGUGg -5'
33097 3' -57.1 NC_007497.1 + 2443 0.78 0.099358
Target:  5'- -uGCGCCGCUgggcguuCGCGcGGCGACgCGCCa -3'
miRNA:   3'- cuCGUGGUGAau-----GCGC-CCGCUG-GUGG- -5'
33097 3' -57.1 NC_007497.1 + 10156 0.77 0.108179
Target:  5'- aGGCGCCAC---CGC-GGCGACCGCCg -3'
miRNA:   3'- cUCGUGGUGaauGCGcCCGCUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 18763 0.76 0.128063
Target:  5'- cGGCGaCGCggaagagUACGCGGGCGacGCCACCa -3'
miRNA:   3'- cUCGUgGUGa------AUGCGCCCGC--UGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 10195 0.75 0.155505
Target:  5'- gGAGCguGCCGCgguCGCGcaaacGGCGGCCGCCc -3'
miRNA:   3'- -CUCG--UGGUGaauGCGC-----CCGCUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 29201 0.75 0.168823
Target:  5'- cAGCACCACcugcauCGCcagaaaaaGGGCGAUCGCCa -3'
miRNA:   3'- cUCGUGGUGaau---GCG--------CCCGCUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 27128 0.73 0.203925
Target:  5'- -uGCGCCGCcccgccUUGCGCGGaucggcaauaGCGAUCACCu -3'
miRNA:   3'- cuCGUGGUG------AAUGCGCC----------CGCUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 21279 0.73 0.232733
Target:  5'- -cGCGCUGCUggGCGCGgcGGCGGgCGCCg -3'
miRNA:   3'- cuCGUGGUGAa-UGCGC--CCGCUgGUGG- -5'
33097 3' -57.1 NC_007497.1 + 7812 0.72 0.26489
Target:  5'- cGGCGCCGCcg--GCGGGCuGAUCACUg -3'
miRNA:   3'- cUCGUGGUGaaugCGCCCG-CUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 27060 0.71 0.271738
Target:  5'- cGGCGCCACU---GCGGGCG-CCuuguCCa -3'
miRNA:   3'- cUCGUGGUGAaugCGCCCGCuGGu---GG- -5'
33097 3' -57.1 NC_007497.1 + 3382 0.71 0.278729
Target:  5'- -cGCACUGC--GCGCGGGCGAUaUGCCu -3'
miRNA:   3'- cuCGUGGUGaaUGCGCCCGCUG-GUGG- -5'
33097 3' -57.1 NC_007497.1 + 23743 0.71 0.293137
Target:  5'- -cGCACCGCUgccgacguugUAUGCGaagcucacGGCGGCCGCg -3'
miRNA:   3'- cuCGUGGUGA----------AUGCGC--------CCGCUGGUGg -5'
33097 3' -57.1 NC_007497.1 + 483 0.71 0.293137
Target:  5'- cGGCACCGC---CGCGGuuGAUCGCCa -3'
miRNA:   3'- cUCGUGGUGaauGCGCCcgCUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 29374 0.7 0.33982
Target:  5'- cGAGCGCCACgu-CGCGGcCGACguCg -3'
miRNA:   3'- -CUCGUGGUGaauGCGCCcGCUGguGg -5'
33097 3' -57.1 NC_007497.1 + 3330 0.7 0.348105
Target:  5'- aGGGCGCgCugUUGCGCGGcacgcugaaCGACCaaGCCg -3'
miRNA:   3'- -CUCGUG-GugAAUGCGCCc--------GCUGG--UGG- -5'
33097 3' -57.1 NC_007497.1 + 17819 0.7 0.348105
Target:  5'- cGGCGacaCGCUUACGuuGGuCGACCGCUu -3'
miRNA:   3'- cUCGUg--GUGAAUGCgcCC-GCUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 2523 0.69 0.373818
Target:  5'- cGGUccuGCCACUucugcccgggcgUGCGCGccGGCGGCCGCg -3'
miRNA:   3'- cUCG---UGGUGA------------AUGCGC--CCGCUGGUGg -5'
33097 3' -57.1 NC_007497.1 + 17734 0.69 0.373818
Target:  5'- aGGCGcCCGCagugGCGcCGGGUGAUCGCUu -3'
miRNA:   3'- cUCGU-GGUGaa--UGC-GCCCGCUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.