miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33103 3' -55 NC_007497.1 + 27895 0.65 0.712122
Target:  5'- aCC-UGCGagaACGAGCGC-GCGUCg--- -3'
miRNA:   3'- gGGuACGU---UGCUCGCGgCGCAGaacg -5'
33103 3' -55 NC_007497.1 + 29697 0.65 0.712122
Target:  5'- gCCAUGCu-CGGcuGCGCCGUGccguUCggaUGCg -3'
miRNA:   3'- gGGUACGuuGCU--CGCGGCGC----AGa--ACG- -5'
33103 3' -55 NC_007497.1 + 15263 0.65 0.712122
Target:  5'- gCCG-GC--CGAGCGCCGCGag--GCg -3'
miRNA:   3'- gGGUaCGuuGCUCGCGGCGCagaaCG- -5'
33103 3' -55 NC_007497.1 + 12625 0.65 0.711036
Target:  5'- aCgCGUcGCAgaugaugGCGAGCGCCGag-UUUGCg -3'
miRNA:   3'- -GgGUA-CGU-------UGCUCGCGGCgcaGAACG- -5'
33103 3' -55 NC_007497.1 + 38514 0.66 0.701236
Target:  5'- aCCCAggugGUAGCGAGuCGCUgGCGcCacgGCu -3'
miRNA:   3'- -GGGUa---CGUUGCUC-GCGG-CGCaGaa-CG- -5'
33103 3' -55 NC_007497.1 + 4031 0.66 0.701236
Target:  5'- gCCGUGCcgucuCGGcCGCCGCGUCc--- -3'
miRNA:   3'- gGGUACGuu---GCUcGCGGCGCAGaacg -5'
33103 3' -55 NC_007497.1 + 14219 0.66 0.701236
Target:  5'- -aUcgGCGGCGAuGUGCUGCGUUUucaugggcaccUGCa -3'
miRNA:   3'- ggGuaCGUUGCU-CGCGGCGCAGA-----------ACG- -5'
33103 3' -55 NC_007497.1 + 25696 0.66 0.694671
Target:  5'- uUCCA-GCGAUGuacguGCGCCcguccgaggugauuuGCGUCUUGa -3'
miRNA:   3'- -GGGUaCGUUGCu----CGCGG---------------CGCAGAACg -5'
33103 3' -55 NC_007497.1 + 17488 0.66 0.690282
Target:  5'- gCCAUGCGcuugaugauCGAGaCGCCGCccgcgcggaaCUUGCa -3'
miRNA:   3'- gGGUACGUu--------GCUC-GCGGCGca--------GAACG- -5'
33103 3' -55 NC_007497.1 + 2685 0.66 0.67927
Target:  5'- aCCGUGCGgcGCGAGaucCCG-GUCUUcGCg -3'
miRNA:   3'- gGGUACGU--UGCUCgc-GGCgCAGAA-CG- -5'
33103 3' -55 NC_007497.1 + 50 0.66 0.67927
Target:  5'- cCCCGU-CAACGcugcauguGCGuuGCGUuUUUGCa -3'
miRNA:   3'- -GGGUAcGUUGCu-------CGCggCGCA-GAACG- -5'
33103 3' -55 NC_007497.1 + 40478 0.66 0.67927
Target:  5'- -gUAUGCAGCGA-CGCUGCaacGUCUUcGCc -3'
miRNA:   3'- ggGUACGUUGCUcGCGGCG---CAGAA-CG- -5'
33103 3' -55 NC_007497.1 + 10184 0.66 0.668213
Target:  5'- gCCgCA-GCAACGGagcGUGCCGCgGUCgcGCa -3'
miRNA:   3'- -GG-GUaCGUUGCU---CGCGGCG-CAGaaCG- -5'
33103 3' -55 NC_007497.1 + 42596 0.67 0.646005
Target:  5'- gCCGUGCuauuuGCGcGUGCCcgGUGUCUgccgGCu -3'
miRNA:   3'- gGGUACGu----UGCuCGCGG--CGCAGAa---CG- -5'
33103 3' -55 NC_007497.1 + 34826 0.67 0.646005
Target:  5'- gCCUcgGCAcgcuCGAGCucgcccugcgcgGCCGCgGUCUcGCg -3'
miRNA:   3'- -GGGuaCGUu---GCUCG------------CGGCG-CAGAaCG- -5'
33103 3' -55 NC_007497.1 + 21827 0.67 0.634877
Target:  5'- uCCCAaGCGACGGGCuGCCGa----UGCu -3'
miRNA:   3'- -GGGUaCGUUGCUCG-CGGCgcagaACG- -5'
33103 3' -55 NC_007497.1 + 14058 0.67 0.623745
Target:  5'- uCCCAUGUuggggccagcuGACaGcGCGUCGUGUCgcgGCg -3'
miRNA:   3'- -GGGUACG-----------UUG-CuCGCGGCGCAGaa-CG- -5'
33103 3' -55 NC_007497.1 + 2978 0.67 0.612621
Target:  5'- ----cGCAuACGGGCGCaugaaGCGUCcgUGCa -3'
miRNA:   3'- ggguaCGU-UGCUCGCGg----CGCAGa-ACG- -5'
33103 3' -55 NC_007497.1 + 6869 0.67 0.612621
Target:  5'- uUCAUGCGGCcGGCGUucgaCGCGUCgaucGCu -3'
miRNA:   3'- gGGUACGUUGcUCGCG----GCGCAGaa--CG- -5'
33103 3' -55 NC_007497.1 + 14293 0.67 0.601516
Target:  5'- gCgCAUGCAcugcgucgccaGCGAGCGgcCCGCGgCUcUGCa -3'
miRNA:   3'- -GgGUACGU-----------UGCUCGC--GGCGCaGA-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.