miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33107 3' -53.1 NC_007497.1 + 36159 0.66 0.813767
Target:  5'- uUCGcGGUAACGCuGAcGAUCAGcucGCGCa -3'
miRNA:   3'- -GGC-UCGUUGCG-CUuCUAGUCca-CGCG- -5'
33107 3' -53.1 NC_007497.1 + 1716 0.66 0.813767
Target:  5'- cCCGGccGCAcccaGCGggGAUCAcucgGCGCg -3'
miRNA:   3'- -GGCU--CGUug--CGCuuCUAGUcca-CGCG- -5'
33107 3' -53.1 NC_007497.1 + 33170 0.66 0.813767
Target:  5'- uUCGAGCugcacGGCGCGAucg-UAGGccGCGCg -3'
miRNA:   3'- -GGCUCG-----UUGCGCUucuaGUCCa-CGCG- -5'
33107 3' -53.1 NC_007497.1 + 27569 0.66 0.81281
Target:  5'- cCCGAGCGucugccuGCGCGGGcGGcugCGGGgcgGcCGCg -3'
miRNA:   3'- -GGCUCGU-------UGCGCUU-CUa--GUCCa--C-GCG- -5'
33107 3' -53.1 NC_007497.1 + 13454 0.66 0.81089
Target:  5'- aCGGGCucgacGAUGCGAucuGGAcgcuucgcugcguaUCAGGUGCa- -3'
miRNA:   3'- gGCUCG-----UUGCGCU---UCU--------------AGUCCACGcg -5'
33107 3' -53.1 NC_007497.1 + 22028 0.66 0.79327
Target:  5'- aUCGAGCGcuuuucgGCGCcugcuuccaGucGAucUCAGGUGCGUu -3'
miRNA:   3'- -GGCUCGU-------UGCG---------CuuCU--AGUCCACGCG- -5'
33107 3' -53.1 NC_007497.1 + 43087 0.66 0.784243
Target:  5'- gCCGGcGCAAucucuuUGCGGcgcuccagcacGGA-CGGGUGCGCc -3'
miRNA:   3'- -GGCU-CGUU------GCGCU-----------UCUaGUCCACGCG- -5'
33107 3' -53.1 NC_007497.1 + 41252 0.66 0.784243
Target:  5'- gCCGguGGuCAGCGCGAAucUCAGGUaGuUGCa -3'
miRNA:   3'- -GGC--UC-GUUGCGCUUcuAGUCCA-C-GCG- -5'
33107 3' -53.1 NC_007497.1 + 20703 0.66 0.774057
Target:  5'- gCGAaCAGCGCGA--GUCGGauaUGCGCa -3'
miRNA:   3'- gGCUcGUUGCGCUucUAGUCc--ACGCG- -5'
33107 3' -53.1 NC_007497.1 + 34687 0.66 0.774057
Target:  5'- uCCGAGCGgcagccugcGCGCGcAGAuggcUUGGGcaaaggGCGCg -3'
miRNA:   3'- -GGCUCGU---------UGCGCuUCU----AGUCCa-----CGCG- -5'
33107 3' -53.1 NC_007497.1 + 19329 0.67 0.753238
Target:  5'- aUCGcGGCuacCGaUGGAGAUCGGGgGCGCc -3'
miRNA:   3'- -GGC-UCGuu-GC-GCUUCUAGUCCaCGCG- -5'
33107 3' -53.1 NC_007497.1 + 23198 0.67 0.74263
Target:  5'- gCCGAGC-ACGuCGGcaagcAGAUCgAGG-GCGUc -3'
miRNA:   3'- -GGCUCGuUGC-GCU-----UCUAG-UCCaCGCG- -5'
33107 3' -53.1 NC_007497.1 + 30261 0.67 0.740494
Target:  5'- gCCGGGCAGCGggaugcugcugaaCGGAGggCAgaccugaccguucGGUGCGa -3'
miRNA:   3'- -GGCUCGUUGC-------------GCUUCuaGU-------------CCACGCg -5'
33107 3' -53.1 NC_007497.1 + 10361 0.67 0.731905
Target:  5'- gCGAGCAGCGCGAcgucgaguuuGAUCGacaugcagGCGCc -3'
miRNA:   3'- gGCUCGUUGCGCUu---------CUAGUcca-----CGCG- -5'
33107 3' -53.1 NC_007497.1 + 30577 0.67 0.731905
Target:  5'- -aGAGCGAUGCGAgcAGAUgaUAGGgaaUGCGa -3'
miRNA:   3'- ggCUCGUUGCGCU--UCUA--GUCC---ACGCg -5'
33107 3' -53.1 NC_007497.1 + 11725 0.67 0.710156
Target:  5'- uCCGAGCGucaGCGAG----AGGUcGCGCg -3'
miRNA:   3'- -GGCUCGUug-CGCUUcuagUCCA-CGCG- -5'
33107 3' -53.1 NC_007497.1 + 30414 0.68 0.699155
Target:  5'- -aGGGCgGGCGCGGuuGAUCAGGUGa-- -3'
miRNA:   3'- ggCUCG-UUGCGCUu-CUAGUCCACgcg -5'
33107 3' -53.1 NC_007497.1 + 10106 0.68 0.699155
Target:  5'- gCCGAGCGcgaaguaGCGAucgcGAcgCAGGcGCGCg -3'
miRNA:   3'- -GGCUCGUug-----CGCUu---CUa-GUCCaCGCG- -5'
33107 3' -53.1 NC_007497.1 + 28126 0.68 0.688087
Target:  5'- gCGAGCGGCGCGcucccGGcgUAGcGcaUGCGCg -3'
miRNA:   3'- gGCUCGUUGCGCu----UCuaGUC-C--ACGCG- -5'
33107 3' -53.1 NC_007497.1 + 16059 0.68 0.676962
Target:  5'- aCGGGUugauGCGCGAauGGcgCGGGcGCGUc -3'
miRNA:   3'- gGCUCGu---UGCGCU--UCuaGUCCaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.