Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33159 | 3' | -56 | NC_007497.1 | + | 16968 | 0.66 | 0.640998 |
Target: 5'- uUCGAAuCGCugaaAGGCGCauggcaauCGAUGCCGCcguUCGa -3' miRNA: 3'- -GGCUU-GUG----UCCGCG--------GUUACGGCG---AGC- -5' |
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33159 | 3' | -56 | NC_007497.1 | + | 33338 | 0.66 | 0.607832 |
Target: 5'- cUCGAcGCGCAGcuGCGCgAuccGCUGCUCGa -3' miRNA: 3'- -GGCU-UGUGUC--CGCGgUua-CGGCGAGC- -5' |
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33159 | 3' | -56 | NC_007497.1 | + | 37699 | 0.66 | 0.596807 |
Target: 5'- cCCGu-CGCuccgccaaGCGCCAugucucgcGUGCCGCUCa -3' miRNA: 3'- -GGCuuGUGuc------CGCGGU--------UACGGCGAGc -5' |
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33159 | 3' | -56 | NC_007497.1 | + | 16905 | 0.66 | 0.629938 |
Target: 5'- cUCGuucuCGCAGGUcCCGGUGC-GCUCGu -3' miRNA: 3'- -GGCuu--GUGUCCGcGGUUACGgCGAGC- -5' |
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33159 | 3' | -56 | NC_007497.1 | + | 21340 | 0.66 | 0.61888 |
Target: 5'- gCCG-ACAUgaAGGCgGCC---GCCGCUCa -3' miRNA: 3'- -GGCuUGUG--UCCG-CGGuuaCGGCGAGc -5' |
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33159 | 3' | -56 | NC_007497.1 | + | 12001 | 0.66 | 0.607832 |
Target: 5'- gCCGGGCGCucgcucuguaucAGGagucCGCCGAgaacGCCGCUgGg -3' miRNA: 3'- -GGCUUGUG------------UCC----GCGGUUa---CGGCGAgC- -5' |
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33159 | 3' | -56 | NC_007497.1 | + | 8819 | 0.66 | 0.640998 |
Target: 5'- gCGGAUACGcGGaaGCCGcgGCCGCggCGu -3' miRNA: 3'- gGCUUGUGU-CCg-CGGUuaCGGCGa-GC- -5' |
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33159 | 3' | -56 | NC_007497.1 | + | 38237 | 0.66 | 0.629938 |
Target: 5'- aCGAgGCGguGGCGCCGAUGaaGUUg- -3' miRNA: 3'- gGCU-UGUguCCGCGGUUACggCGAgc -5' |
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33159 | 3' | -56 | NC_007497.1 | + | 14746 | 0.66 | 0.629938 |
Target: 5'- gCGGAUcaGCGGGUGCgAAcGCCgGUUCGg -3' miRNA: 3'- gGCUUG--UGUCCGCGgUUaCGG-CGAGC- -5' |
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33159 | 3' | -56 | NC_007497.1 | + | 12179 | 0.66 | 0.629938 |
Target: 5'- gCGAGCgGCAuuGGCGCCuGUGUUcgguugGCUCGg -3' miRNA: 3'- gGCUUG-UGU--CCGCGGuUACGG------CGAGC- -5' |
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33159 | 3' | -56 | NC_007497.1 | + | 41417 | 0.66 | 0.61888 |
Target: 5'- cCCGcGCGCAGuGCGCCGcacgGCUGguUUCGa -3' miRNA: 3'- -GGCuUGUGUC-CGCGGUua--CGGC--GAGC- -5' |
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33159 | 3' | -56 | NC_007497.1 | + | 2540 | 0.66 | 0.640998 |
Target: 5'- cCCGGGCGugcGCGCCGGcgGCCGCggCGc -3' miRNA: 3'- -GGCUUGUgucCGCGGUUa-CGGCGa-GC- -5' |
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33159 | 3' | -56 | NC_007497.1 | + | 26300 | 0.66 | 0.65205 |
Target: 5'- uCCGAAaACuucguGGCGUCGucGCgGCUCGg -3' miRNA: 3'- -GGCUUgUGu----CCGCGGUuaCGgCGAGC- -5' |
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33159 | 3' | -56 | NC_007497.1 | + | 41662 | 0.66 | 0.596807 |
Target: 5'- uCCGAGCGCGaGa--CAGaGCCGCUCGa -3' miRNA: 3'- -GGCUUGUGUcCgcgGUUaCGGCGAGC- -5' |
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33159 | 3' | -56 | NC_007497.1 | + | 2582 | 0.66 | 0.629938 |
Target: 5'- gCCGAACgauugGCAGaCGCCGAUGgaGUUCa -3' miRNA: 3'- -GGCUUG-----UGUCcGCGGUUACggCGAGc -5' |
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33159 | 3' | -56 | NC_007497.1 | + | 24404 | 0.66 | 0.61888 |
Target: 5'- aUCGcGCGCAGGaauaCGCCgAGUGCCcccuGCUUGa -3' miRNA: 3'- -GGCuUGUGUCC----GCGG-UUACGG----CGAGC- -5' |
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33159 | 3' | -56 | NC_007497.1 | + | 41102 | 0.66 | 0.629938 |
Target: 5'- uCCGcuuCGCGGuGaCGCCGGUGCC-CUCc -3' miRNA: 3'- -GGCuu-GUGUC-C-GCGGUUACGGcGAGc -5' |
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33159 | 3' | -56 | NC_007497.1 | + | 19338 | 0.67 | 0.563947 |
Target: 5'- aCCGAuggagauCGgGGGCGCCGAcacgGCCugaGUUCGa -3' miRNA: 3'- -GGCUu------GUgUCCGCGGUUa---CGG---CGAGC- -5' |
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33159 | 3' | -56 | NC_007497.1 | + | 36470 | 0.67 | 0.563947 |
Target: 5'- gCCGAGcCGCA-GCGCCAGUGUCauUUCGa -3' miRNA: 3'- -GGCUU-GUGUcCGCGGUUACGGc-GAGC- -5' |
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33159 | 3' | -56 | NC_007497.1 | + | 15087 | 0.67 | 0.553094 |
Target: 5'- uCCGAacgGCACGGcGCaGCCGAgcaugGCCGaUCGu -3' miRNA: 3'- -GGCU---UGUGUC-CG-CGGUUa----CGGCgAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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