miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33159 3' -56 NC_007497.1 + 1777 0.7 0.409686
Target:  5'- gCGAGgacguugUACAGGCGgCAgaguAUGUCGCUCGc -3'
miRNA:   3'- gGCUU-------GUGUCCGCgGU----UACGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 2540 0.66 0.640998
Target:  5'- cCCGGGCGugcGCGCCGGcgGCCGCggCGc -3'
miRNA:   3'- -GGCUUGUgucCGCGGUUa-CGGCGa-GC- -5'
33159 3' -56 NC_007497.1 + 2582 0.66 0.629938
Target:  5'- gCCGAACgauugGCAGaCGCCGAUGgaGUUCa -3'
miRNA:   3'- -GGCUUG-----UGUCcGCGGUUACggCGAGc -5'
33159 3' -56 NC_007497.1 + 5153 0.72 0.293225
Target:  5'- aCGuacauCGCGGGCgguGCCAAUGCCGCg-- -3'
miRNA:   3'- gGCuu---GUGUCCG---CGGUUACGGCGagc -5'
33159 3' -56 NC_007497.1 + 5925 0.7 0.374233
Target:  5'- gCGAACGCGGGUGUCGaggaugacgucGUGCagauguuGCUCGa -3'
miRNA:   3'- gGCUUGUGUCCGCGGU-----------UACGg------CGAGC- -5'
33159 3' -56 NC_007497.1 + 6983 0.68 0.535864
Target:  5'- uCCGGACGCaaucggaauugucggGGGCGCCAaaggcuacGUGuCCGUcgCGa -3'
miRNA:   3'- -GGCUUGUG---------------UCCGCGGU--------UAC-GGCGa-GC- -5'
33159 3' -56 NC_007497.1 + 8019 0.67 0.585812
Target:  5'- gCGAGgcgGCGGGCGUCGA-GCCGgaCGa -3'
miRNA:   3'- gGCUUg--UGUCCGCGGUUaCGGCgaGC- -5'
33159 3' -56 NC_007497.1 + 8309 0.68 0.510386
Target:  5'- uCCGAcucgaaaugACACuGGCGC---UGCgGCUCGg -3'
miRNA:   3'- -GGCU---------UGUGuCCGCGguuACGgCGAGC- -5'
33159 3' -56 NC_007497.1 + 8819 0.66 0.640998
Target:  5'- gCGGAUACGcGGaaGCCGcgGCCGCggCGu -3'
miRNA:   3'- gGCUUGUGU-CCg-CGGUuaCGGCGa-GC- -5'
33159 3' -56 NC_007497.1 + 9849 0.73 0.251555
Target:  5'- gCGGucGCACAGGuCGCgAcgGcCCGCUCGa -3'
miRNA:   3'- gGCU--UGUGUCC-GCGgUuaC-GGCGAGC- -5'
33159 3' -56 NC_007497.1 + 10104 0.69 0.44913
Target:  5'- gCGcGCGCAGGC-----UGCCGCUCGg -3'
miRNA:   3'- gGCuUGUGUCCGcgguuACGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 10148 0.71 0.340092
Target:  5'- gCCGAACG-AGGCGCCAccGCgGCg-- -3'
miRNA:   3'- -GGCUUGUgUCCGCGGUuaCGgCGagc -5'
33159 3' -56 NC_007497.1 + 11273 0.7 0.392153
Target:  5'- aCGuuGCACGGGCGC--GUGCUGCUgCGc -3'
miRNA:   3'- gGCu-UGUGUCCGCGguUACGGCGA-GC- -5'
33159 3' -56 NC_007497.1 + 11384 0.67 0.589107
Target:  5'- aUCGGACGCGGGCGggcggcgcccguuCCGA-GCCggaaagcaggcgucuGCUCGa -3'
miRNA:   3'- -GGCUUGUGUCCGC-------------GGUUaCGG---------------CGAGC- -5'
33159 3' -56 NC_007497.1 + 12001 0.66 0.607832
Target:  5'- gCCGGGCGCucgcucuguaucAGGagucCGCCGAgaacGCCGCUgGg -3'
miRNA:   3'- -GGCUUGUG------------UCC----GCGGUUa---CGGCGAgC- -5'
33159 3' -56 NC_007497.1 + 12179 0.66 0.629938
Target:  5'- gCGAGCgGCAuuGGCGCCuGUGUUcgguugGCUCGg -3'
miRNA:   3'- gGCUUG-UGU--CCGCGGuUACGG------CGAGC- -5'
33159 3' -56 NC_007497.1 + 12265 0.68 0.520943
Target:  5'- -aGGcCGCAG-CGCgGAuUGCCGCUCGg -3'
miRNA:   3'- ggCUuGUGUCcGCGgUU-ACGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 14557 0.69 0.44913
Target:  5'- gCCGGGCguGCAGGUcgaguucacgcuGUCGucGCCGCUCGa -3'
miRNA:   3'- -GGCUUG--UGUCCG------------CGGUuaCGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 14746 0.66 0.629938
Target:  5'- gCGGAUcaGCGGGUGCgAAcGCCgGUUCGg -3'
miRNA:   3'- gGCUUG--UGUCCGCGgUUaCGG-CGAGC- -5'
33159 3' -56 NC_007497.1 + 14964 0.68 0.489548
Target:  5'- gCCGGAaa-AGGCGCCGGaGCCGgUgCGg -3'
miRNA:   3'- -GGCUUgugUCCGCGGUUaCGGCgA-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.