miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33159 3' -56 NC_007497.1 + 32607 1.1 0.000574
Target:  5'- aCCGAACACAGGCGCCAAUGCCGCUCGc -3'
miRNA:   3'- -GGCUUGUGUCCGCGGUUACGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 9849 0.73 0.251555
Target:  5'- gCGGucGCACAGGuCGCgAcgGcCCGCUCGa -3'
miRNA:   3'- gGCU--UGUGUCC-GCGgUuaC-GGCGAGC- -5'
33159 3' -56 NC_007497.1 + 39864 0.73 0.25748
Target:  5'- gCGGACGCuGGCuugcuucGCCGAcccaGCCGCUCGu -3'
miRNA:   3'- gGCUUGUGuCCG-------CGGUUa---CGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 22756 0.73 0.278764
Target:  5'- aCUGGAaGCAGGCGCCGAaaagCGCUCGa -3'
miRNA:   3'- -GGCUUgUGUCCGCGGUUacg-GCGAGC- -5'
33159 3' -56 NC_007497.1 + 5153 0.72 0.293225
Target:  5'- aCGuacauCGCGGGCgguGCCAAUGCCGCg-- -3'
miRNA:   3'- gGCuu---GUGUCCG---CGGUUACGGCGagc -5'
33159 3' -56 NC_007497.1 + 16071 0.72 0.316004
Target:  5'- gCGAaugGCGCGGGCGCgucuggcuCAAUccGCCGUUCGg -3'
miRNA:   3'- gGCU---UGUGUCCGCG--------GUUA--CGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 10148 0.71 0.340092
Target:  5'- gCCGAACG-AGGCGCCAccGCgGCg-- -3'
miRNA:   3'- -GGCUUGUgUCCGCGGUuaCGgCGagc -5'
33159 3' -56 NC_007497.1 + 5925 0.7 0.374233
Target:  5'- gCGAACGCGGGUGUCGaggaugacgucGUGCagauguuGCUCGa -3'
miRNA:   3'- gGCUUGUGUCCGCGGU-----------UACGg------CGAGC- -5'
33159 3' -56 NC_007497.1 + 11273 0.7 0.392153
Target:  5'- aCGuuGCACGGGCGC--GUGCUGCUgCGc -3'
miRNA:   3'- gGCu-UGUGUCCGCGguUACGGCGA-GC- -5'
33159 3' -56 NC_007497.1 + 31565 0.7 0.392153
Target:  5'- gUGGAUuaGCAGGUGCCGcuuCCGCUCGc -3'
miRNA:   3'- gGCUUG--UGUCCGCGGUuacGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 25051 0.7 0.40132
Target:  5'- -gGAACGCGGGUguaugcguuagaGCCGcUGUCGUUCGg -3'
miRNA:   3'- ggCUUGUGUCCG------------CGGUuACGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 43052 0.7 0.40132
Target:  5'- aCCGGACACAcaucGCGCCGAgugauccCCGCUgGg -3'
miRNA:   3'- -GGCUUGUGUc---CGCGGUUac-----GGCGAgC- -5'
33159 3' -56 NC_007497.1 + 1777 0.7 0.409686
Target:  5'- gCGAGgacguugUACAGGCGgCAgaguAUGUCGCUCGc -3'
miRNA:   3'- gGCUU-------GUGUCCGCgGU----UACGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 23610 0.7 0.410622
Target:  5'- aUCGGGCacgACAGGCGCCGuacgaCGCUCu -3'
miRNA:   3'- -GGCUUG---UGUCCGCGGUuacg-GCGAGc -5'
33159 3' -56 NC_007497.1 + 10104 0.69 0.44913
Target:  5'- gCGcGCGCAGGC-----UGCCGCUCGg -3'
miRNA:   3'- gGCuUGUGUCCGcgguuACGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 14557 0.69 0.44913
Target:  5'- gCCGGGCguGCAGGUcgaguucacgcuGUCGucGCCGCUCGa -3'
miRNA:   3'- -GGCUUG--UGUCCG------------CGGUuaCGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 19269 0.69 0.459065
Target:  5'- aCCGAuggcACGCAGaucauuucGCGCCAGUgcGCCGCg-- -3'
miRNA:   3'- -GGCU----UGUGUC--------CGCGGUUA--CGGCGagc -5'
33159 3' -56 NC_007497.1 + 42639 0.69 0.469116
Target:  5'- aUCGAugACAcgguGGUGCCG-UGCCaCUCGa -3'
miRNA:   3'- -GGCUugUGU----CCGCGGUuACGGcGAGC- -5'
33159 3' -56 NC_007497.1 + 43991 0.68 0.479279
Target:  5'- aCGGGCGCcgucGGCGUgauCGAUGCCGCa-- -3'
miRNA:   3'- gGCUUGUGu---CCGCG---GUUACGGCGagc -5'
33159 3' -56 NC_007497.1 + 34633 0.68 0.479279
Target:  5'- gCCGGcggucgccGCGguGGCGCCucguucgGCgCGCUCGc -3'
miRNA:   3'- -GGCU--------UGUguCCGCGGuua----CG-GCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.