miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33159 3' -56 NC_007497.1 + 41102 0.66 0.629938
Target:  5'- uCCGcuuCGCGGuGaCGCCGGUGCC-CUCc -3'
miRNA:   3'- -GGCuu-GUGUC-C-GCGGUUACGGcGAGc -5'
33159 3' -56 NC_007497.1 + 18530 0.67 0.563947
Target:  5'- gCGAGCGggucgAGGCGCUugaGCCGCUUa -3'
miRNA:   3'- gGCUUGUg----UCCGCGGuuaCGGCGAGc -5'
33159 3' -56 NC_007497.1 + 36470 0.67 0.563947
Target:  5'- gCCGAGcCGCA-GCGCCAGUGUCauUUCGa -3'
miRNA:   3'- -GGCUU-GUGUcCGCGGUUACGGc-GAGC- -5'
33159 3' -56 NC_007497.1 + 19338 0.67 0.563947
Target:  5'- aCCGAuggagauCGgGGGCGCCGAcacgGCCugaGUUCGa -3'
miRNA:   3'- -GGCUu------GUgUCCGCGGUUa---CGG---CGAGC- -5'
33159 3' -56 NC_007497.1 + 35360 0.67 0.585812
Target:  5'- gCUucGCGCuGGCGCCGGUcGCuucguuCGCUCGa -3'
miRNA:   3'- -GGcuUGUGuCCGCGGUUA-CG------GCGAGC- -5'
33159 3' -56 NC_007497.1 + 21828 0.67 0.585812
Target:  5'- cCCaAGCgACGGGCuGCCGAUGCUuccuCUCGa -3'
miRNA:   3'- -GGcUUG-UGUCCG-CGGUUACGGc---GAGC- -5'
33159 3' -56 NC_007497.1 + 38965 0.67 0.585812
Target:  5'- uCCGcACccucCAGuGCGCCGA--CCGCUCGg -3'
miRNA:   3'- -GGCuUGu---GUC-CGCGGUUacGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 37699 0.66 0.596807
Target:  5'- cCCGu-CGCuccgccaaGCGCCAugucucgcGUGCCGCUCa -3'
miRNA:   3'- -GGCuuGUGuc------CGCGGU--------UACGGCGAGc -5'
33159 3' -56 NC_007497.1 + 33338 0.66 0.607832
Target:  5'- cUCGAcGCGCAGcuGCGCgAuccGCUGCUCGa -3'
miRNA:   3'- -GGCU-UGUGUC--CGCGgUua-CGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 22819 0.67 0.557428
Target:  5'- aCCGGGCGCAGaCGCCGAacucgaaacgucaguUGCgGC-CGc -3'
miRNA:   3'- -GGCUUGUGUCcGCGGUU---------------ACGgCGaGC- -5'
33159 3' -56 NC_007497.1 + 40933 0.67 0.553094
Target:  5'- gCGAugACcgAGGCuGCCGAcGCCGCa-- -3'
miRNA:   3'- gGCUugUG--UCCG-CGGUUaCGGCGagc -5'
33159 3' -56 NC_007497.1 + 27111 0.67 0.542304
Target:  5'- gCGGAUACGGcCGCCGAUgcGCCGCccCGc -3'
miRNA:   3'- gGCUUGUGUCcGCGGUUA--CGGCGa-GC- -5'
33159 3' -56 NC_007497.1 + 39864 0.73 0.25748
Target:  5'- gCGGACGCuGGCuugcuucGCCGAcccaGCCGCUCGu -3'
miRNA:   3'- gGCUUGUGuCCG-------CGGUUa---CGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 16071 0.72 0.316004
Target:  5'- gCGAaugGCGCGGGCGCgucuggcuCAAUccGCCGUUCGg -3'
miRNA:   3'- gGCU---UGUGUCCGCG--------GUUA--CGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 25051 0.7 0.40132
Target:  5'- -gGAACGCGGGUguaugcguuagaGCCGcUGUCGUUCGg -3'
miRNA:   3'- ggCUUGUGUCCG------------CGGUuACGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 10104 0.69 0.44913
Target:  5'- gCGcGCGCAGGC-----UGCCGCUCGg -3'
miRNA:   3'- gGCuUGUGUCCGcgguuACGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 19269 0.69 0.459065
Target:  5'- aCCGAuggcACGCAGaucauuucGCGCCAGUgcGCCGCg-- -3'
miRNA:   3'- -GGCU----UGUGUC--------CGCGGUUA--CGGCGagc -5'
33159 3' -56 NC_007497.1 + 34633 0.68 0.479279
Target:  5'- gCCGGcggucgccGCGguGGCGCCucguucgGCgCGCUCGc -3'
miRNA:   3'- -GGCU--------UGUguCCGCGGuua----CG-GCGAGC- -5'
33159 3' -56 NC_007497.1 + 14964 0.68 0.489548
Target:  5'- gCCGGAaa-AGGCGCCGGaGCCGgUgCGg -3'
miRNA:   3'- -GGCUUgugUCCGCGGUUaCGGCgA-GC- -5'
33159 3' -56 NC_007497.1 + 12265 0.68 0.520943
Target:  5'- -aGGcCGCAG-CGCgGAuUGCCGCUCGg -3'
miRNA:   3'- ggCUuGUGUCcGCGgUU-ACGGCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.