Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33162 | 5' | -59.4 | NC_007497.1 | + | 39931 | 0.66 | 0.473293 |
Target: 5'- cCGGCCUUCGAaaccgGCugGACGCGgcagaGCUGg -3' miRNA: 3'- cGCCGGAGGUUg----CG--CUGCGCag---CGAC- -5' |
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33162 | 5' | -59.4 | NC_007497.1 | + | 11626 | 0.66 | 0.473293 |
Target: 5'- uGCGGCgC-CCAGCGaugaGugGCGUgGUa- -3' miRNA: 3'- -CGCCG-GaGGUUGCg---CugCGCAgCGac -5' |
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33162 | 5' | -59.4 | NC_007497.1 | + | 36992 | 0.66 | 0.473293 |
Target: 5'- gGCGGCg-CCGgagGCGgaacaagcuuCGGCGCGcCGCUGa -3' miRNA: 3'- -CGCCGgaGGU---UGC----------GCUGCGCaGCGAC- -5' |
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33162 | 5' | -59.4 | NC_007497.1 | + | 12305 | 0.66 | 0.473293 |
Target: 5'- cGCGGCCgccgCCGGCgGCaACGCGUaCGg-- -3' miRNA: 3'- -CGCCGGa---GGUUG-CGcUGCGCA-GCgac -5' |
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33162 | 5' | -59.4 | NC_007497.1 | + | 23453 | 0.66 | 0.463437 |
Target: 5'- gGCGGCCgccuucaugUCGGCGaucucGCGCG-CGCUGa -3' miRNA: 3'- -CGCCGGa--------GGUUGCgc---UGCGCaGCGAC- -5' |
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33162 | 5' | -59.4 | NC_007497.1 | + | 4550 | 0.66 | 0.453689 |
Target: 5'- gGCgGGUCUgCCGACGUccGACGCGUUGg-- -3' miRNA: 3'- -CG-CCGGA-GGUUGCG--CUGCGCAGCgac -5' |
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33162 | 5' | -59.4 | NC_007497.1 | + | 40804 | 0.66 | 0.453689 |
Target: 5'- --uGCCgcaucgaaCGGCGCGA-GCGUCGCUGc -3' miRNA: 3'- cgcCGGag------GUUGCGCUgCGCAGCGAC- -5' |
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33162 | 5' | -59.4 | NC_007497.1 | + | 33988 | 0.66 | 0.453689 |
Target: 5'- uGCGGCgUCCAucgcugccaGCGUG-CGCG-CGCc- -3' miRNA: 3'- -CGCCGgAGGU---------UGCGCuGCGCaGCGac -5' |
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33162 | 5' | -59.4 | NC_007497.1 | + | 4088 | 0.66 | 0.453689 |
Target: 5'- cGCGcGCCuucccguuccuUCCGGCcCG-CGCGUCGCg- -3' miRNA: 3'- -CGC-CGG-----------AGGUUGcGCuGCGCAGCGac -5' |
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33162 | 5' | -59.4 | NC_007497.1 | + | 17859 | 0.66 | 0.444054 |
Target: 5'- cCGGUCUCCGGCGCGGuaUG-GaUGCUGg -3' miRNA: 3'- cGCCGGAGGUUGCGCU--GCgCaGCGAC- -5' |
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33162 | 5' | -59.4 | NC_007497.1 | + | 29557 | 0.66 | 0.444054 |
Target: 5'- cGCGGCCauaCA--GCGGCGCGacauaucCGCUGg -3' miRNA: 3'- -CGCCGGag-GUugCGCUGCGCa------GCGAC- -5' |
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33162 | 5' | -59.4 | NC_007497.1 | + | 35975 | 0.66 | 0.43359 |
Target: 5'- cGCGGCUUCCGcguaucCGCGAagcgaccCGCG-CGCa- -3' miRNA: 3'- -CGCCGGAGGUu-----GCGCU-------GCGCaGCGac -5' |
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33162 | 5' | -59.4 | NC_007497.1 | + | 43103 | 0.67 | 0.415858 |
Target: 5'- uGCGGCgCUCCAGCaCGgACGgGUgCGCc- -3' miRNA: 3'- -CGCCG-GAGGUUGcGC-UGCgCA-GCGac -5' |
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33162 | 5' | -59.4 | NC_007497.1 | + | 5585 | 0.67 | 0.414938 |
Target: 5'- gGCGGCCUgcugaauccggagCCGaugcGCGCGAUGaagGUCGCc- -3' miRNA: 3'- -CGCCGGA-------------GGU----UGCGCUGCg--CAGCGac -5' |
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33162 | 5' | -59.4 | NC_007497.1 | + | 23868 | 0.67 | 0.406706 |
Target: 5'- cGCGGCacucaUCCGGCGUGAa--G-CGCUGg -3' miRNA: 3'- -CGCCGg----AGGUUGCGCUgcgCaGCGAC- -5' |
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33162 | 5' | -59.4 | NC_007497.1 | + | 12612 | 0.67 | 0.397681 |
Target: 5'- gGCGGaa--CGGC-CGACGCGUCGCa- -3' miRNA: 3'- -CGCCggagGUUGcGCUGCGCAGCGac -5' |
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33162 | 5' | -59.4 | NC_007497.1 | + | 6873 | 0.67 | 0.397681 |
Target: 5'- uGCGGCCggcgUUCGACGCGuCGa-UCGCUc -3' miRNA: 3'- -CGCCGG----AGGUUGCGCuGCgcAGCGAc -5' |
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33162 | 5' | -59.4 | NC_007497.1 | + | 3515 | 0.67 | 0.388786 |
Target: 5'- cGCGaCCUUCAccuucACGCG-CGCGUCGUc- -3' miRNA: 3'- -CGCcGGAGGU-----UGCGCuGCGCAGCGac -5' |
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33162 | 5' | -59.4 | NC_007497.1 | + | 10033 | 0.67 | 0.376554 |
Target: 5'- cGCGGCCaagggaacgaucgaUCaGACGCGcuACGCGgcggcgcUCGCUGa -3' miRNA: 3'- -CGCCGG--------------AGgUUGCGC--UGCGC-------AGCGAC- -5' |
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33162 | 5' | -59.4 | NC_007497.1 | + | 44651 | 0.68 | 0.371392 |
Target: 5'- cCGGCCgCCGAUGCuGuCGCGggGCUGu -3' miRNA: 3'- cGCCGGaGGUUGCG-CuGCGCagCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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