miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33164 5' -52 NC_007497.1 + 41467 0.66 0.836799
Target:  5'- -cGCCGAugGACGgCGaucagaaaacggaucUCGGUAUcgccuacuacaUGGCg -3'
miRNA:   3'- aaCGGCUugUUGC-GC---------------AGCCAUG-----------AUCG- -5'
33164 5' -52 NC_007497.1 + 40579 0.66 0.833084
Target:  5'- aUGCuCGGcuucgugcGCAugGCGcCGGaAUUGGCg -3'
miRNA:   3'- aACG-GCU--------UGUugCGCaGCCaUGAUCG- -5'
33164 5' -52 NC_007497.1 + 9644 0.66 0.833084
Target:  5'- -cGCCG-GCcGCGaCGUCGG--CUGGCu -3'
miRNA:   3'- aaCGGCuUGuUGC-GCAGCCauGAUCG- -5'
33164 5' -52 NC_007497.1 + 4557 0.66 0.823637
Target:  5'- cUGCCGAcgucCGACGCGUUGGcGaaGGUc -3'
miRNA:   3'- aACGGCUu---GUUGCGCAGCCaUgaUCG- -5'
33164 5' -52 NC_007497.1 + 28201 0.66 0.823637
Target:  5'- -cGCCGGACGACGgGUCacucuucUGC-AGCg -3'
miRNA:   3'- aaCGGCUUGUUGCgCAGcc-----AUGaUCG- -5'
33164 5' -52 NC_007497.1 + 5136 0.66 0.817863
Target:  5'- -aGCCGAACGGgcugcuuacguacauCGCGggCGGUGCcaauGCc -3'
miRNA:   3'- aaCGGCUUGUU---------------GCGCa-GCCAUGau--CG- -5'
33164 5' -52 NC_007497.1 + 8983 0.66 0.81397
Target:  5'- -aGCCGcuCGACGCGacggCGGaGCUguaucAGCg -3'
miRNA:   3'- aaCGGCuuGUUGCGCa---GCCaUGA-----UCG- -5'
33164 5' -52 NC_007497.1 + 28503 0.66 0.81397
Target:  5'- aUGUCGAGCAccuucGCGCGcgCGGUcgaauggagGCUguccGGCg -3'
miRNA:   3'- aACGGCUUGU-----UGCGCa-GCCA---------UGA----UCG- -5'
33164 5' -52 NC_007497.1 + 39419 0.66 0.81397
Target:  5'- -cGCCGGACGuACGCGUCaGGU-Cg--- -3'
miRNA:   3'- aaCGGCUUGU-UGCGCAG-CCAuGaucg -5'
33164 5' -52 NC_007497.1 + 11703 0.66 0.80807
Target:  5'- -cGCCGAGCuggccgacuACGCGUCcgagcgucagcgagaGGUcgcgcgagaGCUGGCc -3'
miRNA:   3'- aaCGGCUUGu--------UGCGCAG---------------CCA---------UGAUCG- -5'
33164 5' -52 NC_007497.1 + 8667 0.66 0.804096
Target:  5'- -cGaCCGGAgGAUGCGU-GG-GCUGGCg -3'
miRNA:   3'- aaC-GGCUUgUUGCGCAgCCaUGAUCG- -5'
33164 5' -52 NC_007497.1 + 8417 0.66 0.804096
Target:  5'- -cGCCGAuCAGCGaGgagCGGUACgacuuGCa -3'
miRNA:   3'- aaCGGCUuGUUGCgCa--GCCAUGau---CG- -5'
33164 5' -52 NC_007497.1 + 9142 0.66 0.804096
Target:  5'- -aGCuCGGGCAAgcauuCGCGUCGGgccaguUGCgcgGGCa -3'
miRNA:   3'- aaCG-GCUUGUU-----GCGCAGCC------AUGa--UCG- -5'
33164 5' -52 NC_007497.1 + 34783 0.66 0.794025
Target:  5'- -gGCCuccaacGCGACGCGUCGcUGCUGcGCc -3'
miRNA:   3'- aaCGGcu----UGUUGCGCAGCcAUGAU-CG- -5'
33164 5' -52 NC_007497.1 + 7058 0.67 0.773343
Target:  5'- aUUGCCucgGGACGGCGCauagcUCaGUGCUGGUa -3'
miRNA:   3'- -AACGG---CUUGUUGCGc----AGcCAUGAUCG- -5'
33164 5' -52 NC_007497.1 + 38985 0.67 0.773343
Target:  5'- cUGCCGGGCGgacuCGCGgagUGGU--UGGCg -3'
miRNA:   3'- aACGGCUUGUu---GCGCa--GCCAugAUCG- -5'
33164 5' -52 NC_007497.1 + 6876 0.67 0.773343
Target:  5'- -gGCCGGcguuCGACGCGUCGaucGCUcaGGCc -3'
miRNA:   3'- aaCGGCUu---GUUGCGCAGCca-UGA--UCG- -5'
33164 5' -52 NC_007497.1 + 6804 0.67 0.762758
Target:  5'- -cGCCaAACAACGCGUUc-UAUUGGCg -3'
miRNA:   3'- aaCGGcUUGUUGCGCAGccAUGAUCG- -5'
33164 5' -52 NC_007497.1 + 39839 0.67 0.752026
Target:  5'- -gGCUgGAACGuagcCGCGUUGGUcugcggacGCUGGCu -3'
miRNA:   3'- aaCGG-CUUGUu---GCGCAGCCA--------UGAUCG- -5'
33164 5' -52 NC_007497.1 + 43336 0.68 0.730177
Target:  5'- aUGCCGAucuCGACGUugaGGUGCUucGCg -3'
miRNA:   3'- aACGGCUu--GUUGCGcagCCAUGAu-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.