Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33166 | 3' | -56.2 | NC_007497.1 | + | 114 | 0.67 | 0.593818 |
Target: 5'- aCGCGGCcaUCGCGgcaggcuacagccCCGCGAcAGCa -3' miRNA: 3'- gGCGCCGaaGGCGCaua----------GGCGCU-UCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 851 | 0.68 | 0.529357 |
Target: 5'- aCCGCGGCguucugcuugcugaCCGUGUucacGUgCGCGucGCa -3' miRNA: 3'- -GGCGCCGaa------------GGCGCA----UAgGCGCuuCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 2551 | 0.66 | 0.625493 |
Target: 5'- gCGcCGGCggCCGCGgcgcAUCCuuGCGAuuuccgAGCg -3' miRNA: 3'- gGC-GCCGaaGGCGCa---UAGG--CGCU------UCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 4048 | 0.66 | 0.669211 |
Target: 5'- gCCGCGuccccgaaccGCU--CGCGUAccgCCGCGAugAGCu -3' miRNA: 3'- -GGCGC----------CGAagGCGCAUa--GGCGCU--UCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 4411 | 0.69 | 0.437234 |
Target: 5'- gCC-CGGUUggCGCuguUCCGCGAGGCa -3' miRNA: 3'- -GGcGCCGAagGCGcauAGGCGCUUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 4575 | 0.67 | 0.549541 |
Target: 5'- gCCGCGuCUUgCGuCG-AUCCGCcGAGCa -3' miRNA: 3'- -GGCGCcGAAgGC-GCaUAGGCGcUUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 4905 | 0.67 | 0.60363 |
Target: 5'- -gGCGGCacgacgaGCGgcuggGUCgGCGAAGCa -3' miRNA: 3'- ggCGCCGaagg---CGCa----UAGgCGCUUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 5159 | 0.66 | 0.625493 |
Target: 5'- aUCGCGGg--CgGUGccaaugCCGCGAAGCa -3' miRNA: 3'- -GGCGCCgaaGgCGCaua---GGCGCUUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 5517 | 0.67 | 0.602538 |
Target: 5'- uUCGCGuGCUg-CGCG-AUCCguacacgGCGAAGCc -3' miRNA: 3'- -GGCGC-CGAagGCGCaUAGG-------CGCUUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 7992 | 0.68 | 0.537824 |
Target: 5'- aCCGCgcguucuGGCUcgaUCCGC---UgCGCGAGGCg -3' miRNA: 3'- -GGCG-------CCGA---AGGCGcauAgGCGCUUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 8825 | 0.73 | 0.28574 |
Target: 5'- aCGCGGaagCCGCGg--CCGCGGcguucGGCa -3' miRNA: 3'- gGCGCCgaaGGCGCauaGGCGCU-----UCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 9090 | 0.68 | 0.517796 |
Target: 5'- gCgGUGGCgcugUCCgGCGUAUCgGcCGAcacAGCg -3' miRNA: 3'- -GgCGCCGa---AGG-CGCAUAGgC-GCU---UCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 9214 | 0.67 | 0.60363 |
Target: 5'- gCGUGGCcgaCGCG-AUCgCGCGcGGCa -3' miRNA: 3'- gGCGCCGaagGCGCaUAG-GCGCuUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 9939 | 0.69 | 0.44692 |
Target: 5'- aUCGCGcGCgagaCCGCGg--CCGCGcaGGGCg -3' miRNA: 3'- -GGCGC-CGaa--GGCGCauaGGCGC--UUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 10163 | 0.7 | 0.399736 |
Target: 5'- aCCGCGGCgaCCGCcGgcuuggCCGCagcaacGGAGCg -3' miRNA: 3'- -GGCGCCGaaGGCG-Caua---GGCG------CUUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 11011 | 0.7 | 0.381774 |
Target: 5'- gCGCGGCaggCCGgGUugaUUGCGggGCg -3' miRNA: 3'- gGCGCCGaa-GGCgCAua-GGCGCuuCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 11338 | 0.66 | 0.614554 |
Target: 5'- gCCGCGcaggUCgCGCGUAUCgGCGucaauGCg -3' miRNA: 3'- -GGCGCcga-AG-GCGCAUAGgCGCuu---CG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 11963 | 0.66 | 0.644098 |
Target: 5'- -aGCGGCUcacguugagcgcgaUUgGCGUGUUgGCGcGAGCc -3' miRNA: 3'- ggCGCCGA--------------AGgCGCAUAGgCGC-UUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 12423 | 0.67 | 0.549541 |
Target: 5'- gUCGUcaaGGCUUCUGCG-GUUCG-GAAGCc -3' miRNA: 3'- -GGCG---CCGAAGGCGCaUAGGCgCUUCG- -5' |
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33166 | 3' | -56.2 | NC_007497.1 | + | 14959 | 0.67 | 0.60363 |
Target: 5'- -aGCGGCgggUgaGUGUAUuuGcCGggGCg -3' miRNA: 3'- ggCGCCGa--AggCGCAUAggC-GCuuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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