Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33167 | 3' | -56.2 | NC_007497.1 | + | 30649 | 0.66 | 0.583882 |
Target: 5'- aCUGCAcagcgaUCGGCGGCgAUGugCugCGUUu -3' miRNA: 3'- -GGCGU------AGUCGCCG-UGCugGugGUAGu -5' |
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33167 | 3' | -56.2 | NC_007497.1 | + | 37145 | 0.66 | 0.628024 |
Target: 5'- -gGCAUgGuGCGGCAguacaccugguCGGCgGCCGUCGa -3' miRNA: 3'- ggCGUAgU-CGCCGU-----------GCUGgUGGUAGU- -5' |
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33167 | 3' | -56.2 | NC_007497.1 | + | 43047 | 0.66 | 0.628024 |
Target: 5'- cUCGCAUCgAGCGcGCugGGCUuCUAUaCAa -3' miRNA: 3'- -GGCGUAG-UCGC-CGugCUGGuGGUA-GU- -5' |
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33167 | 3' | -56.2 | NC_007497.1 | + | 19411 | 0.66 | 0.639093 |
Target: 5'- gCCGUGUCGGCGccccCGAUCuCCAUCGg -3' miRNA: 3'- -GGCGUAGUCGCcgu-GCUGGuGGUAGU- -5' |
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33167 | 3' | -56.2 | NC_007497.1 | + | 26222 | 0.66 | 0.605907 |
Target: 5'- cCCgGCGUgCAGgGGCAgcCGACUACCGa-- -3' miRNA: 3'- -GG-CGUA-GUCgCCGU--GCUGGUGGUagu -5' |
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33167 | 3' | -56.2 | NC_007497.1 | + | 34643 | 0.66 | 0.628024 |
Target: 5'- gCCGCGguggcgccucguUCGGCGcgcucGCGCG-CCugCGUCGc -3' miRNA: 3'- -GGCGU------------AGUCGC-----CGUGCuGGugGUAGU- -5' |
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33167 | 3' | -56.2 | NC_007497.1 | + | 35852 | 0.66 | 0.605907 |
Target: 5'- gCUGUAUCAGCGGauCGCGAacaACaCGUCGc -3' miRNA: 3'- -GGCGUAGUCGCC--GUGCUgg-UG-GUAGU- -5' |
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33167 | 3' | -56.2 | NC_007497.1 | + | 44389 | 0.66 | 0.583882 |
Target: 5'- gCCGguUugcucCGGCGGCACcGCCGCgGUUg -3' miRNA: 3'- -GGCguA-----GUCGCCGUGcUGGUGgUAGu -5' |
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33167 | 3' | -56.2 | NC_007497.1 | + | 5524 | 0.66 | 0.639093 |
Target: 5'- gCGUAgUCGGCGaGCGCcaucagGACCGCCuUCGc -3' miRNA: 3'- gGCGU-AGUCGC-CGUG------CUGGUGGuAGU- -5' |
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33167 | 3' | -56.2 | NC_007497.1 | + | 12214 | 0.66 | 0.615853 |
Target: 5'- aCUGCugagAUCAGCgccaucgGGCGCGACCAUgAUg- -3' miRNA: 3'- -GGCG----UAGUCG-------CCGUGCUGGUGgUAgu -5' |
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33167 | 3' | -56.2 | NC_007497.1 | + | 40238 | 0.66 | 0.605907 |
Target: 5'- aCGCGUCGGacguCGGCA-GACCcGCCuUCAc -3' miRNA: 3'- gGCGUAGUC----GCCGUgCUGG-UGGuAGU- -5' |
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33167 | 3' | -56.2 | NC_007497.1 | + | 17273 | 0.66 | 0.628024 |
Target: 5'- gCGCGggcggCuGCGGgGCGGCCGCgAUUc -3' miRNA: 3'- gGCGUa----GuCGCCgUGCUGGUGgUAGu -5' |
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33167 | 3' | -56.2 | NC_007497.1 | + | 7909 | 0.66 | 0.583882 |
Target: 5'- uUGCAUCGGUGGCGugUGAUUugCAUg- -3' miRNA: 3'- gGCGUAGUCGCCGU--GCUGGugGUAgu -5' |
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33167 | 3' | -56.2 | NC_007497.1 | + | 17568 | 0.66 | 0.616959 |
Target: 5'- uCCGCGcgGGCGGCGucuCGAUCAUCAa-- -3' miRNA: 3'- -GGCGUagUCGCCGU---GCUGGUGGUagu -5' |
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33167 | 3' | -56.2 | NC_007497.1 | + | 29331 | 0.66 | 0.639093 |
Target: 5'- gCGCAUCAcauGUACGGCCGCCuGUCc -3' miRNA: 3'- gGCGUAGUcgcCGUGCUGGUGG-UAGu -5' |
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33167 | 3' | -56.2 | NC_007497.1 | + | 33418 | 0.66 | 0.597082 |
Target: 5'- cCCGCGUCcgaugggccagcgcaGGCGcauugacgccgauacGCGCGACCugcgcggccgacugcGCCAUCGu -3' miRNA: 3'- -GGCGUAG---------------UCGC---------------CGUGCUGG---------------UGGUAGU- -5' |
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33167 | 3' | -56.2 | NC_007497.1 | + | 42660 | 0.66 | 0.605907 |
Target: 5'- gCGcCAUCAGCGGguCGAUCuugGCgGUCc -3' miRNA: 3'- gGC-GUAGUCGCCguGCUGG---UGgUAGu -5' |
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33167 | 3' | -56.2 | NC_007497.1 | + | 33310 | 0.66 | 0.594879 |
Target: 5'- aCUGCGUCAGCuugucGGuCGCcACCGCC-UCGa -3' miRNA: 3'- -GGCGUAGUCG-----CC-GUGcUGGUGGuAGU- -5' |
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33167 | 3' | -56.2 | NC_007497.1 | + | 15133 | 0.66 | 0.628024 |
Target: 5'- -gGCAUC-GCGGCccuccGCGauguacuggcggGCCACUAUCAg -3' miRNA: 3'- ggCGUAGuCGCCG-----UGC------------UGGUGGUAGU- -5' |
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33167 | 3' | -56.2 | NC_007497.1 | + | 28746 | 0.67 | 0.551169 |
Target: 5'- gCCGCugauuuaCGGCGaCACGAUCACCGguUCGa -3' miRNA: 3'- -GGCGua-----GUCGCcGUGCUGGUGGU--AGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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