miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33167 3' -56.2 NC_007497.1 + 29555 0.67 0.52967
Target:  5'- uUCGCGgccauaCAGCGGCGCGAcauauCCGCUggGUCc -3'
miRNA:   3'- -GGCGUa-----GUCGCCGUGCU-----GGUGG--UAGu -5'
33167 3' -56.2 NC_007497.1 + 13813 0.69 0.456227
Target:  5'- gCCGCAUgGGCcGCACGggacgccgcagggGCCGCCG-CAg -3'
miRNA:   3'- -GGCGUAgUCGcCGUGC-------------UGGUGGUaGU- -5'
33167 3' -56.2 NC_007497.1 + 13858 0.69 0.456227
Target:  5'- gCCGCAUgGGCcGCACGggacgccgcauggGCCGCCG-CAg -3'
miRNA:   3'- -GGCGUAgUCGcCGUGC-------------UGGUGGUaGU- -5'
33167 3' -56.2 NC_007497.1 + 14799 0.69 0.457225
Target:  5'- aCUGC-UCGGCGGCAaaUGACCGCgGcUCu -3'
miRNA:   3'- -GGCGuAGUCGCCGU--GCUGGUGgU-AGu -5'
33167 3' -56.2 NC_007497.1 + 43768 0.69 0.457225
Target:  5'- aCCGUGUCAGUgucGGC-CGcaACCACCuUCAa -3'
miRNA:   3'- -GGCGUAGUCG---CCGuGC--UGGUGGuAGU- -5'
33167 3' -56.2 NC_007497.1 + 25197 0.68 0.486639
Target:  5'- aCCGCccgacauAUCGGCGGCGacACUuCCGUCAa -3'
miRNA:   3'- -GGCG-------UAGUCGCCGUgcUGGuGGUAGU- -5'
33167 3' -56.2 NC_007497.1 + 33910 0.68 0.498029
Target:  5'- aCGCuUCGGCGGcCAUG-CCGCCG-CGa -3'
miRNA:   3'- gGCGuAGUCGCC-GUGCuGGUGGUaGU- -5'
33167 3' -56.2 NC_007497.1 + 2446 0.67 0.519036
Target:  5'- gCCGC-UgGGCGuucGCGCGGCgacgCGCCAUCAc -3'
miRNA:   3'- -GGCGuAgUCGC---CGUGCUG----GUGGUAGU- -5'
33167 3' -56.2 NC_007497.1 + 24287 0.67 0.528603
Target:  5'- gCCGCcaacGUCGGCGGCcuguuacACGAUCcCCGUUc -3'
miRNA:   3'- -GGCG----UAGUCGCCG-------UGCUGGuGGUAGu -5'
33167 3' -56.2 NC_007497.1 + 2139 0.69 0.447304
Target:  5'- uUGguUCgAGUGGCACGgcACCACCGUg- -3'
miRNA:   3'- gGCguAG-UCGCCGUGC--UGGUGGUAgu -5'
33167 3' -56.2 NC_007497.1 + 21027 0.69 0.408865
Target:  5'- aCUGCAgcagacgaUgAGCGaGCGCGGCCGCCGg-- -3'
miRNA:   3'- -GGCGU--------AgUCGC-CGUGCUGGUGGUagu -5'
33167 3' -56.2 NC_007497.1 + 41167 0.7 0.390433
Target:  5'- gCCGCAUCGuCGGCGuuCG-CCGCCcgCAc -3'
miRNA:   3'- -GGCGUAGUcGCCGU--GCuGGUGGuaGU- -5'
33167 3' -56.2 NC_007497.1 + 32490 0.73 0.256807
Target:  5'- gCCGCcggCGGCGGcCGCGA-CGCCAUCc -3'
miRNA:   3'- -GGCGua-GUCGCC-GUGCUgGUGGUAGu -5'
33167 3' -56.2 NC_007497.1 + 34564 0.72 0.28449
Target:  5'- gCGCAUgAGCGaGCcugcgcggGCGGCCGCCGUUu -3'
miRNA:   3'- gGCGUAgUCGC-CG--------UGCUGGUGGUAGu -5'
33167 3' -56.2 NC_007497.1 + 271 0.72 0.286659
Target:  5'- gCCGCAcacgcgagcaccacuUCAGCGG-GCGACCACCcagccaugccgagAUCAc -3'
miRNA:   3'- -GGCGU---------------AGUCGCCgUGCUGGUGG-------------UAGU- -5'
33167 3' -56.2 NC_007497.1 + 40805 0.72 0.294722
Target:  5'- gCCGCAUCGaaCGGCgcgagcgucgcugcaGCGGCCGCCAUg- -3'
miRNA:   3'- -GGCGUAGUc-GCCG---------------UGCUGGUGGUAgu -5'
33167 3' -56.2 NC_007497.1 + 16798 0.71 0.32234
Target:  5'- cCCGCAUCAGCGccgaucgaUACGcCCACCgAUCGa -3'
miRNA:   3'- -GGCGUAGUCGCc-------GUGCuGGUGG-UAGU- -5'
33167 3' -56.2 NC_007497.1 + 27094 0.71 0.330347
Target:  5'- aCCGCGccggCAGCGGagcggaUACGGCCGCCGa-- -3'
miRNA:   3'- -GGCGUa---GUCGCC------GUGCUGGUGGUagu -5'
33167 3' -56.2 NC_007497.1 + 28687 0.71 0.346797
Target:  5'- gCCGUaaAUCAGCGGCACGggcucccccugaGCCGCgCuguUCAc -3'
miRNA:   3'- -GGCG--UAGUCGCCGUGC------------UGGUG-Gu--AGU- -5'
33167 3' -56.2 NC_007497.1 + 14301 0.7 0.354388
Target:  5'- aCUGCGUCgccagcgAGCGGCccGCGGCuCugCAUCGc -3'
miRNA:   3'- -GGCGUAG-------UCGCCG--UGCUG-GugGUAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.