miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33167 3' -56.2 NC_007497.1 + 36063 1.1 0.000568
Target:  5'- gCCGCAUCAGCGGCACGACCACCAUCAc -3'
miRNA:   3'- -GGCGUAGUCGCCGUGCUGGUGGUAGU- -5'
33167 3' -56.2 NC_007497.1 + 33980 0.75 0.176975
Target:  5'- uUCGC--CGGCGGCAUGGCCGCCGa-- -3'
miRNA:   3'- -GGCGuaGUCGCCGUGCUGGUGGUagu -5'
33167 3' -56.2 NC_007497.1 + 30490 0.74 0.219465
Target:  5'- gCGaCAUCAaCGGCACGAUCACCG-CAa -3'
miRNA:   3'- gGC-GUAGUcGCCGUGCUGGUGGUaGU- -5'
33167 3' -56.2 NC_007497.1 + 28839 0.73 0.243813
Target:  5'- cCCGCAUCAGCccGGCcUGGCUGgCGUCAc -3'
miRNA:   3'- -GGCGUAGUCG--CCGuGCUGGUgGUAGU- -5'
33167 3' -56.2 NC_007497.1 + 32490 0.73 0.256807
Target:  5'- gCCGCcggCGGCGGcCGCGA-CGCCAUCc -3'
miRNA:   3'- -GGCGua-GUCGCC-GUGCUgGUGGUAGu -5'
33167 3' -56.2 NC_007497.1 + 26840 0.73 0.256808
Target:  5'- gCGCAgauucagCAGCGGC-CGgugacggucguGCCGCCAUCGg -3'
miRNA:   3'- gGCGUa------GUCGCCGuGC-----------UGGUGGUAGU- -5'
33167 3' -56.2 NC_007497.1 + 34564 0.72 0.28449
Target:  5'- gCGCAUgAGCGaGCcugcgcggGCGGCCGCCGUUu -3'
miRNA:   3'- gGCGUAgUCGC-CG--------UGCUGGUGGUAGu -5'
33167 3' -56.2 NC_007497.1 + 271 0.72 0.286659
Target:  5'- gCCGCAcacgcgagcaccacuUCAGCGG-GCGACCACCcagccaugccgagAUCAc -3'
miRNA:   3'- -GGCGU---------------AGUCGCCgUGCUGGUGG-------------UAGU- -5'
33167 3' -56.2 NC_007497.1 + 40805 0.72 0.294722
Target:  5'- gCCGCAUCGaaCGGCgcgagcgucgcugcaGCGGCCGCCAUg- -3'
miRNA:   3'- -GGCGUAGUc-GCCG---------------UGCUGGUGGUAgu -5'
33167 3' -56.2 NC_007497.1 + 33920 0.72 0.299194
Target:  5'- uCCGaCGUCAuCGGUAUGACCGCCcagCAa -3'
miRNA:   3'- -GGC-GUAGUcGCCGUGCUGGUGGua-GU- -5'
33167 3' -56.2 NC_007497.1 + 16798 0.71 0.32234
Target:  5'- cCCGCAUCAGCGccgaucgaUACGcCCACCgAUCGa -3'
miRNA:   3'- -GGCGUAGUCGCc-------GUGCuGGUGG-UAGU- -5'
33167 3' -56.2 NC_007497.1 + 27094 0.71 0.330347
Target:  5'- aCCGCGccggCAGCGGagcggaUACGGCCGCCGa-- -3'
miRNA:   3'- -GGCGUa---GUCGCC------GUGCUGGUGGUagu -5'
33167 3' -56.2 NC_007497.1 + 28687 0.71 0.346797
Target:  5'- gCCGUaaAUCAGCGGCACGggcucccccugaGCCGCgCuguUCAc -3'
miRNA:   3'- -GGCG--UAGUCGCCGUGC------------UGGUG-Gu--AGU- -5'
33167 3' -56.2 NC_007497.1 + 14301 0.7 0.354388
Target:  5'- aCUGCGUCgccagcgAGCGGCccGCGGCuCugCAUCGc -3'
miRNA:   3'- -GGCGUAG-------UCGCCG--UGCUG-GugGUAGU- -5'
33167 3' -56.2 NC_007497.1 + 4228 0.7 0.372554
Target:  5'- gCCGCAgcUCggGGCGGCAUGACCGUCGa-- -3'
miRNA:   3'- -GGCGU--AG--UCGCCGUGCUGGUGGUagu -5'
33167 3' -56.2 NC_007497.1 + 41167 0.7 0.390433
Target:  5'- gCCGCAUCGuCGGCGuuCG-CCGCCcgCAc -3'
miRNA:   3'- -GGCGUAGUcGCCGU--GCuGGUGGuaGU- -5'
33167 3' -56.2 NC_007497.1 + 27176 0.7 0.390433
Target:  5'- gCGCAUCGGCGGC-CGuauCCGCUc--- -3'
miRNA:   3'- gGCGUAGUCGCCGuGCu--GGUGGuagu -5'
33167 3' -56.2 NC_007497.1 + 18878 0.7 0.399581
Target:  5'- -gGCGUCGGCGGCuu--CCACCA-CAa -3'
miRNA:   3'- ggCGUAGUCGCCGugcuGGUGGUaGU- -5'
33167 3' -56.2 NC_007497.1 + 21027 0.69 0.408865
Target:  5'- aCUGCAgcagacgaUgAGCGaGCGCGGCCGCCGg-- -3'
miRNA:   3'- -GGCGU--------AgUCGC-CGUGCUGGUGGUagu -5'
33167 3' -56.2 NC_007497.1 + 27559 0.69 0.427829
Target:  5'- gUCGCAUCGGCGGaCAU----GCCGUCAg -3'
miRNA:   3'- -GGCGUAGUCGCC-GUGcuggUGGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.