miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33167 3' -56.2 NC_007497.1 + 271 0.72 0.286659
Target:  5'- gCCGCAcacgcgagcaccacuUCAGCGG-GCGACCACCcagccaugccgagAUCAc -3'
miRNA:   3'- -GGCGU---------------AGUCGCCgUGCUGGUGG-------------UAGU- -5'
33167 3' -56.2 NC_007497.1 + 1008 0.69 0.437504
Target:  5'- aCCGCGUaCGGC-GCGCGAUCAUCGa-- -3'
miRNA:   3'- -GGCGUA-GUCGcCGUGCUGGUGGUagu -5'
33167 3' -56.2 NC_007497.1 + 2139 0.69 0.447304
Target:  5'- uUGguUCgAGUGGCACGgcACCACCGUg- -3'
miRNA:   3'- gGCguAG-UCGCCGUGC--UGGUGGUAgu -5'
33167 3' -56.2 NC_007497.1 + 2446 0.67 0.519036
Target:  5'- gCCGC-UgGGCGuucGCGCGGCgacgCGCCAUCAc -3'
miRNA:   3'- -GGCGuAgUCGC---CGUGCUG----GUGGUAGU- -5'
33167 3' -56.2 NC_007497.1 + 4228 0.7 0.372554
Target:  5'- gCCGCAgcUCggGGCGGCAUGACCGUCGa-- -3'
miRNA:   3'- -GGCGU--AG--UCGCCGUGCUGGUGGUagu -5'
33167 3' -56.2 NC_007497.1 + 5524 0.66 0.639093
Target:  5'- gCGUAgUCGGCGaGCGCcaucagGACCGCCuUCGc -3'
miRNA:   3'- gGCGU-AGUCGC-CGUG------CUGGUGGuAGU- -5'
33167 3' -56.2 NC_007497.1 + 7909 0.66 0.583882
Target:  5'- uUGCAUCGGUGGCGugUGAUUugCAUg- -3'
miRNA:   3'- gGCGUAGUCGCCGU--GCUGGugGUAgu -5'
33167 3' -56.2 NC_007497.1 + 11675 0.67 0.572926
Target:  5'- gCCGCAau-GCGGUAgcagcucaucUGGCCGCCAUUu -3'
miRNA:   3'- -GGCGUaguCGCCGU----------GCUGGUGGUAGu -5'
33167 3' -56.2 NC_007497.1 + 12214 0.66 0.615853
Target:  5'- aCUGCugagAUCAGCgccaucgGGCGCGACCAUgAUg- -3'
miRNA:   3'- -GGCG----UAGUCG-------CCGUGCUGGUGgUAgu -5'
33167 3' -56.2 NC_007497.1 + 13701 0.67 0.572926
Target:  5'- cCCGUG-CGGCGGCccauGCGGCgGCCcgCu -3'
miRNA:   3'- -GGCGUaGUCGCCG----UGCUGgUGGuaGu -5'
33167 3' -56.2 NC_007497.1 + 13813 0.69 0.456227
Target:  5'- gCCGCAUgGGCcGCACGggacgccgcagggGCCGCCG-CAg -3'
miRNA:   3'- -GGCGUAgUCGcCGUGC-------------UGGUGGUaGU- -5'
33167 3' -56.2 NC_007497.1 + 13858 0.69 0.456227
Target:  5'- gCCGCAUgGGCcGCACGggacgccgcauggGCCGCCG-CAg -3'
miRNA:   3'- -GGCGUAgUCGcCGUGC-------------UGGUGGUaGU- -5'
33167 3' -56.2 NC_007497.1 + 14301 0.7 0.354388
Target:  5'- aCUGCGUCgccagcgAGCGGCccGCGGCuCugCAUCGc -3'
miRNA:   3'- -GGCGUAG-------UCGCCG--UGCUG-GugGUAGU- -5'
33167 3' -56.2 NC_007497.1 + 14799 0.69 0.457225
Target:  5'- aCUGC-UCGGCGGCAaaUGACCGCgGcUCu -3'
miRNA:   3'- -GGCGuAGUCGCCGU--GCUGGUGgU-AGu -5'
33167 3' -56.2 NC_007497.1 + 14939 0.69 0.457225
Target:  5'- -aGCGUCGGCGGCgACGAUUucgagauuucgGCCAUg- -3'
miRNA:   3'- ggCGUAGUCGCCG-UGCUGG-----------UGGUAgu -5'
33167 3' -56.2 NC_007497.1 + 15133 0.66 0.628024
Target:  5'- -gGCAUC-GCGGCccuccGCGauguacuggcggGCCACUAUCAg -3'
miRNA:   3'- ggCGUAGuCGCCG-----UGC------------UGGUGGUAGU- -5'
33167 3' -56.2 NC_007497.1 + 16798 0.71 0.32234
Target:  5'- cCCGCAUCAGCGccgaucgaUACGcCCACCgAUCGa -3'
miRNA:   3'- -GGCGUAGUCGCc-------GUGCuGGUGG-UAGU- -5'
33167 3' -56.2 NC_007497.1 + 17098 0.67 0.562019
Target:  5'- -gGCAgauGCGGCGCGGCCugCu--- -3'
miRNA:   3'- ggCGUaguCGCCGUGCUGGugGuagu -5'
33167 3' -56.2 NC_007497.1 + 17273 0.66 0.628024
Target:  5'- gCGCGggcggCuGCGGgGCGGCCGCgAUUc -3'
miRNA:   3'- gGCGUa----GuCGCCgUGCUGGUGgUAGu -5'
33167 3' -56.2 NC_007497.1 + 17568 0.66 0.616959
Target:  5'- uCCGCGcgGGCGGCGucuCGAUCAUCAa-- -3'
miRNA:   3'- -GGCGUagUCGCCGU---GCUGGUGGUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.