miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33167 5' -54.4 NC_007497.1 + 23221 0.66 0.717474
Target:  5'- --cGAGGgcGUCGCCGGCUGcCGGg- -3'
miRNA:   3'- caaCUUUauCGGCGGCCGGCaGCUgc -5'
33167 5' -54.4 NC_007497.1 + 14856 0.66 0.684508
Target:  5'- --------uGCCGCCGaGCaGUCGGCGa -3'
miRNA:   3'- caacuuuauCGGCGGC-CGgCAGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 34378 0.67 0.6734
Target:  5'- -------gAGCUGCCGGUauuUGUCGAUGa -3'
miRNA:   3'- caacuuuaUCGGCGGCCG---GCAGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 43667 0.67 0.6734
Target:  5'- --cGAcg-AGCCGCCGGCCGg----- -3'
miRNA:   3'- caaCUuuaUCGGCGGCCGGCagcugc -5'
33167 5' -54.4 NC_007497.1 + 32098 0.67 0.662251
Target:  5'- cGUUuAAcUGGUCGCCGaCCGUCGAgGg -3'
miRNA:   3'- -CAAcUUuAUCGGCGGCcGGCAGCUgC- -5'
33167 5' -54.4 NC_007497.1 + 36029 0.67 0.662251
Target:  5'- --cGGA--AGCCG-CGGCCG-CGGCGu -3'
miRNA:   3'- caaCUUuaUCGGCgGCCGGCaGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 23651 0.67 0.651074
Target:  5'- --------uGCgGCCGGCCGUUGuCGg -3'
miRNA:   3'- caacuuuauCGgCGGCCGGCAGCuGC- -5'
33167 5' -54.4 NC_007497.1 + 33108 0.67 0.651074
Target:  5'- --cGAGAgcUGGCCGC--GCUGUCGAUGg -3'
miRNA:   3'- caaCUUU--AUCGGCGgcCGGCAGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 43287 0.67 0.639878
Target:  5'- -gUGAGGUGaucGCCGCUGGUa-UCGAUGg -3'
miRNA:   3'- caACUUUAU---CGGCGGCCGgcAGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 8836 0.67 0.639878
Target:  5'- -gUGGAA-GGUCGCC-GUCGUCGGCa -3'
miRNA:   3'- caACUUUaUCGGCGGcCGGCAGCUGc -5'
33167 5' -54.4 NC_007497.1 + 28939 0.67 0.639878
Target:  5'- cUUGggGcAGCa-CUGGCCGUCGuCGg -3'
miRNA:   3'- cAACuuUaUCGgcGGCCGGCAGCuGC- -5'
33167 5' -54.4 NC_007497.1 + 34618 0.67 0.628676
Target:  5'- cGUUGcuGcGGCCaaGCCGGCgGUCGccGCGg -3'
miRNA:   3'- -CAACuuUaUCGG--CGGCCGgCAGC--UGC- -5'
33167 5' -54.4 NC_007497.1 + 14381 0.68 0.617476
Target:  5'- --cGAugcagAGCCGCgGGCCGcucgcuggCGACGc -3'
miRNA:   3'- caaCUuua--UCGGCGgCCGGCa-------GCUGC- -5'
33167 5' -54.4 NC_007497.1 + 14175 0.68 0.606289
Target:  5'- --cGAGcaGGCCGCCGG-CGUCcACGc -3'
miRNA:   3'- caaCUUuaUCGGCGGCCgGCAGcUGC- -5'
33167 5' -54.4 NC_007497.1 + 24281 0.68 0.595126
Target:  5'- --aGAAA-AGCCGCCaa-CGUCGGCGg -3'
miRNA:   3'- caaCUUUaUCGGCGGccgGCAGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 29093 0.68 0.583996
Target:  5'- -------cGGCC-UCGGCUGUCGACGa -3'
miRNA:   3'- caacuuuaUCGGcGGCCGGCAGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 42935 0.68 0.561867
Target:  5'- --cGAgGAUAGCCccgauaCCGGCCGggUCGACGc -3'
miRNA:   3'- caaCU-UUAUCGGc-----GGCCGGC--AGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 18817 0.69 0.550887
Target:  5'- -gUGGA--AGCCGCCGacGCCaUCGACa -3'
miRNA:   3'- caACUUuaUCGGCGGC--CGGcAGCUGc -5'
33167 5' -54.4 NC_007497.1 + 28408 0.69 0.539973
Target:  5'- aGUUGAccgAGCCGUCGGCauucuggaUCGGCGu -3'
miRNA:   3'- -CAACUuuaUCGGCGGCCGgc------AGCUGC- -5'
33167 5' -54.4 NC_007497.1 + 35275 0.69 0.507703
Target:  5'- -gUGAcg-AGCCGcCCGGCUGcaagCGACGc -3'
miRNA:   3'- caACUuuaUCGGC-GGCCGGCa---GCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.