miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33178 5' -48.2 NC_007497.1 + 2339 0.66 0.968656
Target:  5'- -aUCCgCGCGCCAucgguuucuuGCGCGGcuUGAauCCg -3'
miRNA:   3'- gaAGGaGCGCGGU----------UGUGUUuuACU--GG- -5'
33178 5' -48.2 NC_007497.1 + 33133 0.66 0.968656
Target:  5'- -gUCCgaGCGUCAgcgagaggucGCGCGAGAgcUGGCCg -3'
miRNA:   3'- gaAGGagCGCGGU----------UGUGUUUU--ACUGG- -5'
33178 5' -48.2 NC_007497.1 + 30400 0.66 0.965061
Target:  5'- -aUCCUCcaGCGCgAcACACAuugcGGUGAUCg -3'
miRNA:   3'- gaAGGAG--CGCGgU-UGUGUu---UUACUGG- -5'
33178 5' -48.2 NC_007497.1 + 38228 0.66 0.965061
Target:  5'- -cUCaggCGCGCCAcggucgccgGCGCGAAcGUGAUCc -3'
miRNA:   3'- gaAGga-GCGCGGU---------UGUGUUU-UACUGG- -5'
33178 5' -48.2 NC_007497.1 + 41052 0.66 0.965061
Target:  5'- --aCCUgcUGCGCgAGCACAA---GGCCa -3'
miRNA:   3'- gaaGGA--GCGCGgUUGUGUUuuaCUGG- -5'
33178 5' -48.2 NC_007497.1 + 39747 0.66 0.961185
Target:  5'- gUUCCUCGCugGCgaCGGCACGAAcaaGCCg -3'
miRNA:   3'- gAAGGAGCG--CG--GUUGUGUUUuacUGG- -5'
33178 5' -48.2 NC_007497.1 + 6509 0.66 0.961185
Target:  5'- --cCCUCGCcCCAAUGCAGua-GAUCg -3'
miRNA:   3'- gaaGGAGCGcGGUUGUGUUuuaCUGG- -5'
33178 5' -48.2 NC_007497.1 + 37149 0.66 0.961185
Target:  5'- gUUUCUCGcCGCUuGCACGGGccGugCg -3'
miRNA:   3'- gAAGGAGC-GCGGuUGUGUUUuaCugG- -5'
33178 5' -48.2 NC_007497.1 + 35422 0.66 0.961185
Target:  5'- --aCCg-GCGCCAGCGCGAAGcUGuCUc -3'
miRNA:   3'- gaaGGagCGCGGUUGUGUUUU-ACuGG- -5'
33178 5' -48.2 NC_007497.1 + 1699 0.66 0.957021
Target:  5'- --cCUUCGUGCgCAGCACuccc-GGCCg -3'
miRNA:   3'- gaaGGAGCGCG-GUUGUGuuuuaCUGG- -5'
33178 5' -48.2 NC_007497.1 + 28496 0.66 0.957021
Target:  5'- --aCCUCGacgguaCGCCGAUcCAGAAUG-CCg -3'
miRNA:   3'- gaaGGAGC------GCGGUUGuGUUUUACuGG- -5'
33178 5' -48.2 NC_007497.1 + 29449 0.67 0.952563
Target:  5'- uUUUCUCGaCGUCGGcCGCGAcGUGGCg -3'
miRNA:   3'- gAAGGAGC-GCGGUU-GUGUUuUACUGg -5'
33178 5' -48.2 NC_007497.1 + 41409 0.67 0.952563
Target:  5'- --gCCUCGCGCUGACGauccGGUcGCCg -3'
miRNA:   3'- gaaGGAGCGCGGUUGUguu-UUAcUGG- -5'
33178 5' -48.2 NC_007497.1 + 15327 0.67 0.952563
Target:  5'- --gCCUCGCggcgcucgGCCGGCguccGCGGGAUGcGCCa -3'
miRNA:   3'- gaaGGAGCG--------CGGUUG----UGUUUUAC-UGG- -5'
33178 5' -48.2 NC_007497.1 + 2738 0.67 0.947804
Target:  5'- --aCCgagcuugaGCGC--ACGCAGAAUGGCCg -3'
miRNA:   3'- gaaGGag------CGCGguUGUGUUUUACUGG- -5'
33178 5' -48.2 NC_007497.1 + 29867 0.67 0.94274
Target:  5'- --aUgUCGCGCCGACuCcGAccGACCa -3'
miRNA:   3'- gaaGgAGCGCGGUUGuGuUUuaCUGG- -5'
33178 5' -48.2 NC_007497.1 + 11364 0.67 0.937366
Target:  5'- uUUCC-CG-GCCu-CACGAAuUGACCa -3'
miRNA:   3'- gAAGGaGCgCGGuuGUGUUUuACUGG- -5'
33178 5' -48.2 NC_007497.1 + 98 0.67 0.937366
Target:  5'- -gUCgUCGCGCCuuCACAAca--ACCa -3'
miRNA:   3'- gaAGgAGCGCGGuuGUGUUuuacUGG- -5'
33178 5' -48.2 NC_007497.1 + 15996 0.67 0.931681
Target:  5'- -aUCCgugCGCGCCGAUA--AAccGGCCu -3'
miRNA:   3'- gaAGGa--GCGCGGUUGUguUUuaCUGG- -5'
33178 5' -48.2 NC_007497.1 + 26036 0.68 0.925682
Target:  5'- uCUUCCgCGuCGCCGGCcauCGGAggcGUGAUCg -3'
miRNA:   3'- -GAAGGaGC-GCGGUUGu--GUUU---UACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.