miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33267 3' -55.7 NC_007605.1 + 41537 0.66 0.937922
Target:  5'- uCCGUCCCCGgGACGUGgUGCu-UCc -3'
miRNA:   3'- cGGUAGGGGCgUUGCGUgGCGuuAGu -5'
33267 3' -55.7 NC_007605.1 + 50560 0.66 0.937922
Target:  5'- cCCGUCCUCggggGCAGCcCACCGCGGc-- -3'
miRNA:   3'- cGGUAGGGG----CGUUGcGUGGCGUUagu -5'
33267 3' -55.7 NC_007605.1 + 144353 0.66 0.937922
Target:  5'- uCCGUCCCCGgGACGUGgUGCu-UCc -3'
miRNA:   3'- cGGUAGGGGCgUUGCGUgGCGuuAGu -5'
33267 3' -55.7 NC_007605.1 + 63728 0.66 0.933024
Target:  5'- aGUCGU-CCCGCGGC-CACUGUcaGAUCAu -3'
miRNA:   3'- -CGGUAgGGGCGUUGcGUGGCG--UUAGU- -5'
33267 3' -55.7 NC_007605.1 + 88039 0.66 0.927889
Target:  5'- cGCCAguaugcgaggCCCCGCGGCaggagGCcCCGCGG-CAg -3'
miRNA:   3'- -CGGUa---------GGGGCGUUG-----CGuGGCGUUaGU- -5'
33267 3' -55.7 NC_007605.1 + 81846 0.66 0.927889
Target:  5'- uGCCAgaaguuUCCCCGgGGCccuGCAuaGCAAUCu -3'
miRNA:   3'- -CGGU------AGGGGCgUUG---CGUggCGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 100738 0.66 0.927889
Target:  5'- cCCGguUCCCCGCGcggcACGCcccuGCCcgGCAGUCu -3'
miRNA:   3'- cGGU--AGGGGCGU----UGCG----UGG--CGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 56166 0.66 0.927889
Target:  5'- cGCCGUacaCCUGCGcACGUgcaggGCCGCAuUCu -3'
miRNA:   3'- -CGGUAg--GGGCGU-UGCG-----UGGCGUuAGu -5'
33267 3' -55.7 NC_007605.1 + 52605 0.66 0.922518
Target:  5'- cGCCGccUCaCCCGCcacCGCAUCGcCGGUCc -3'
miRNA:   3'- -CGGU--AG-GGGCGuu-GCGUGGC-GUUAGu -5'
33267 3' -55.7 NC_007605.1 + 148764 0.66 0.916909
Target:  5'- uGCCGcUCCCCGCAuuccugcuuucgGCGCcCCuGCGgAUCc -3'
miRNA:   3'- -CGGU-AGGGGCGU------------UGCGuGG-CGU-UAGu -5'
33267 3' -55.7 NC_007605.1 + 153998 0.66 0.916909
Target:  5'- uGCgG-CCCUGCAGCGuCACCGUc-UCGg -3'
miRNA:   3'- -CGgUaGGGGCGUUGC-GUGGCGuuAGU- -5'
33267 3' -55.7 NC_007605.1 + 166390 0.67 0.904985
Target:  5'- cGUCAUUCCCGU--CGUGuuGCAAUCc -3'
miRNA:   3'- -CGGUAGGGGCGuuGCGUggCGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 135377 0.67 0.904985
Target:  5'- aGCuCGUCCUCGCGcagaGCGCAaaGCGGcCAg -3'
miRNA:   3'- -CG-GUAGGGGCGU----UGCGUggCGUUaGU- -5'
33267 3' -55.7 NC_007605.1 + 66550 0.67 0.904985
Target:  5'- aCCggCCCCGCAACcuGCGCCGg----- -3'
miRNA:   3'- cGGuaGGGGCGUUG--CGUGGCguuagu -5'
33267 3' -55.7 NC_007605.1 + 25899 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 40498 0.67 0.892133
Target:  5'- cCCAcCCCCGCcgggccccugGugGCucgGCCGCGGUCc -3'
miRNA:   3'- cGGUaGGGGCG----------UugCG---UGGCGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 13623 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 16692 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 19761 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5'
33267 3' -55.7 NC_007605.1 + 32036 0.67 0.892133
Target:  5'- gGCCAUCCCCGCcccccuguguC-CACCcCAGUCc -3'
miRNA:   3'- -CGGUAGGGGCGuu--------GcGUGGcGUUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.