miRNA display CGI


Results 21 - 40 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33269 3' -55 NC_007605.1 + 142196 0.73 0.624366
Target:  5'- cGGCCAccccccGCCGGAGCgggGCAgCggaCCCAGCg -3'
miRNA:   3'- -CCGGU------CGGUUUUGaa-CGUgG---GGGUCG- -5'
33269 3' -55 NC_007605.1 + 142502 0.73 0.624366
Target:  5'- cGGCCAccccccGCCGGAGCgggGCAgCggaCCCAGCg -3'
miRNA:   3'- -CCGGU------CGGUUUUGaa-CGUgG---GGGUCG- -5'
33269 3' -55 NC_007605.1 + 142909 0.74 0.583328
Target:  5'- cGGCCAccccccGCCGGAGCgggGCAgCgaCCCAGCg -3'
miRNA:   3'- -CCGGU------CGGUUUUGaa-CGUgG--GGGUCG- -5'
33269 3' -55 NC_007605.1 + 158335 0.8 0.273629
Target:  5'- cGCCAGCCAgacgGAGCUcuaUGaCGCCCCCGGg -3'
miRNA:   3'- cCGGUCGGU----UUUGA---AC-GUGGGGGUCg -5'
33269 3' -55 NC_007605.1 + 140872 0.73 0.624366
Target:  5'- cGGCCAccccccGCCGGAGCgggGCAgCggaCCCAGCg -3'
miRNA:   3'- -CCGGU------CGGUUUUGaa-CGUgG---GGGUCG- -5'
33269 3' -55 NC_007605.1 + 141585 0.73 0.624366
Target:  5'- cGGCCAccccccGCCGGAGCgggGCAgCggaCCCAGCg -3'
miRNA:   3'- -CCGGU------CGGUUUUGaa-CGUgG---GGGUCG- -5'
33269 3' -55 NC_007605.1 + 142706 0.73 0.624366
Target:  5'- cGGCCAccccccGCCGGAGCgggGCAgCggaCCCAGCg -3'
miRNA:   3'- -CCGGU------CGGUUUUGaa-CGUgG---GGGUCG- -5'
33269 3' -55 NC_007605.1 + 72153 0.81 0.242668
Target:  5'- aGGCCAGUCAAGACa-GCACUacauCCCAGCu -3'
miRNA:   3'- -CCGGUCGGUUUUGaaCGUGG----GGGUCG- -5'
33269 3' -55 NC_007605.1 + 141687 0.73 0.624366
Target:  5'- cGGCCAccccccGCCGGAGCgggGCAgCggaCCCAGCg -3'
miRNA:   3'- -CCGGU------CGGUUUUGaa-CGUgG---GGGUCG- -5'
33269 3' -55 NC_007605.1 + 59774 0.84 0.170834
Target:  5'- gGGCCAGCCGGGACcUGUcaccaccGCCCCaCGGCa -3'
miRNA:   3'- -CCGGUCGGUUUUGaACG-------UGGGG-GUCG- -5'
33269 3' -55 NC_007605.1 + 142604 0.73 0.624366
Target:  5'- cGGCCAccccccGCCGGAGCgggGCAgCggaCCCAGCg -3'
miRNA:   3'- -CCGGU------CGGUUUUGaa-CGUgG---GGGUCG- -5'
33269 3' -55 NC_007605.1 + 142094 0.73 0.624366
Target:  5'- cGGCCAccccccGCCGGAGCgggGCAgCggaCCCAGCg -3'
miRNA:   3'- -CCGGU------CGGUUUUGaa-CGUgG---GGGUCG- -5'
33269 3' -55 NC_007605.1 + 143113 0.73 0.624366
Target:  5'- cGGCCAccccccGCCGGAGCgggGCAgCggaCCCAGCg -3'
miRNA:   3'- -CCGGU------CGGUUUUGaa-CGUgG---GGGUCG- -5'
33269 3' -55 NC_007605.1 + 141890 0.74 0.583328
Target:  5'- cGGCCAcccccGCCGGAGCgggGCAgCggaCCCAGCg -3'
miRNA:   3'- -CCGGU-----CGGUUUUGaa-CGUgG---GGGUCG- -5'
33269 3' -55 NC_007605.1 + 61317 0.74 0.552895
Target:  5'- gGGCCGGCCAAAcgGCgcGCGCggaUCCGGCc -3'
miRNA:   3'- -CCGGUCGGUUU--UGaaCGUGg--GGGUCG- -5'
33269 3' -55 NC_007605.1 + 63304 0.79 0.307679
Target:  5'- -aCCAGCUGAAGCUccccccuccacUGcCACCCCCGGCg -3'
miRNA:   3'- ccGGUCGGUUUUGA-----------AC-GUGGGGGUCG- -5'
33269 3' -55 NC_007605.1 + 55047 0.72 0.675731
Target:  5'- aGGCCugGGCCAGAauuaggaaggcGCUggggGCACgCCCAGa -3'
miRNA:   3'- -CCGG--UCGGUUU-----------UGAa---CGUGgGGGUCg -5'
33269 3' -55 NC_007605.1 + 49027 0.73 0.634659
Target:  5'- cGCCAGCCcGAGCggGCGCUCgguggcucagCCAGCc -3'
miRNA:   3'- cCGGUCGGuUUUGaaCGUGGG----------GGUCG- -5'
33269 3' -55 NC_007605.1 + 141177 0.73 0.624366
Target:  5'- cGGCCAccccccGCCGGAGCgggGCAgCggaCCCAGCg -3'
miRNA:   3'- -CCGGU------CGGUUUUGaa-CGUgG---GGGUCG- -5'
33269 3' -55 NC_007605.1 + 141483 0.73 0.624366
Target:  5'- cGGCCAccccccGCCGGAGCgggGCAgCggaCCCAGCg -3'
miRNA:   3'- -CCGGU------CGGUUUUGaa-CGUgG---GGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.