miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33274 3' -53.3 NC_007605.1 + 26098 0.66 0.966747
Target:  5'- -gGGGUGGACa--CAGGGGGGCGg-- -3'
miRNA:   3'- uaUUCGCCUGggaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 13822 0.66 0.966747
Target:  5'- -gGGGUGGACa--CAGGGGGGCGg-- -3'
miRNA:   3'- uaUUCGCCUGggaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 19960 0.66 0.966747
Target:  5'- -gGGGUGGACa--CAGGGGGGCGg-- -3'
miRNA:   3'- uaUUCGCCUGggaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 32235 0.66 0.966747
Target:  5'- -gGGGUGGACa--CAGGGGGGCGg-- -3'
miRNA:   3'- uaUUCGCCUGggaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 35304 0.66 0.966747
Target:  5'- -gGGGUGGACa--CAGGGGGGCGg-- -3'
miRNA:   3'- uaUUCGCCUGggaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 23029 0.66 0.966747
Target:  5'- -gGGGUGGACa--CAGGGGGGCGg-- -3'
miRNA:   3'- uaUUCGCCUGggaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 29166 0.66 0.966747
Target:  5'- -gGGGUGGACa--CAGGGGGGCGg-- -3'
miRNA:   3'- uaUUCGCCUGggaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 14797 0.66 0.966747
Target:  5'- gGUAAGCGGuucACCUUCA--GGGGUAa-- -3'
miRNA:   3'- -UAUUCGCC---UGGGAGUucUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 16891 0.66 0.966747
Target:  5'- -gGGGUGGACa--CAGGGGGGCGg-- -3'
miRNA:   3'- uaUUCGCCUGggaGUUCUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 33210 0.66 0.966747
Target:  5'- gGUAAGCGGuucACCUUCA--GGGGUAa-- -3'
miRNA:   3'- -UAUUCGCC---UGGGAGUucUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 30141 0.66 0.966747
Target:  5'- gGUAAGCGGuucACCUUCA--GGGGUAa-- -3'
miRNA:   3'- -UAUUCGCC---UGGGAGUucUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 27072 0.66 0.966747
Target:  5'- gGUAAGCGGuucACCUUCA--GGGGUAa-- -3'
miRNA:   3'- -UAUUCGCC---UGGGAGUucUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 24003 0.66 0.966747
Target:  5'- gGUAAGCGGuucACCUUCA--GGGGUAa-- -3'
miRNA:   3'- -UAUUCGCC---UGGGAGUucUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 20935 0.66 0.966747
Target:  5'- gGUAAGCGGuucACCUUCA--GGGGUAg-- -3'
miRNA:   3'- -UAUUCGCC---UGGGAGUucUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 17866 0.66 0.966747
Target:  5'- gGUAAGCGGuucACCUUCA--GGGGUAa-- -3'
miRNA:   3'- -UAUUCGCC---UGGGAGUucUCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 112666 0.66 0.966747
Target:  5'- -cAGGUGGgcucACCCUCuGGuGGGCAc-- -3'
miRNA:   3'- uaUUCGCC----UGGGAGuUCuCCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 45092 0.66 0.96337
Target:  5'- -cGGGUGGGCCC-CGAGGcucucgcagaguGGGCAg-- -3'
miRNA:   3'- uaUUCGCCUGGGaGUUCU------------CCCGUaau -5'
33274 3' -53.3 NC_007605.1 + 14867 0.66 0.95976
Target:  5'- -cGAGgGGACCCUgagaCGGGuGGGUGUg- -3'
miRNA:   3'- uaUUCgCCUGGGA----GUUCuCCCGUAau -5'
33274 3' -53.3 NC_007605.1 + 17936 0.66 0.95976
Target:  5'- -cGAGgGGACCCUgagaCGGGuGGGUGUg- -3'
miRNA:   3'- uaUUCgCCUGGGA----GUUCuCCCGUAau -5'
33274 3' -53.3 NC_007605.1 + 117377 0.66 0.95976
Target:  5'- -aGGGCGGACCCUaaCAGGGucaucguccuGGGCc--- -3'
miRNA:   3'- uaUUCGCCUGGGA--GUUCU----------CCCGuaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.