miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33274 5' -49.2 NC_007605.1 + 22358 0.66 0.997944
Target:  5'- --aGGGGCCUCUUUGg--GCCCUc-- -3'
miRNA:   3'- auaUUCCGGGGGAACaauUGGGAuuu -5'
33274 5' -49.2 NC_007605.1 + 16220 0.66 0.997944
Target:  5'- --aGGGGCCUCUUUGg--GCCCUc-- -3'
miRNA:   3'- auaUUCCGGGGGAACaauUGGGAuuu -5'
33274 5' -49.2 NC_007605.1 + 13151 0.66 0.997944
Target:  5'- --aGGGGCCUCUUUGg--GCCCUc-- -3'
miRNA:   3'- auaUUCCGGGGGAACaauUGGGAuuu -5'
33274 5' -49.2 NC_007605.1 + 71310 0.66 0.997944
Target:  5'- -----aGCCCCCUggccucucUGACCCUAGAg -3'
miRNA:   3'- auauucCGGGGGAaca-----AUUGGGAUUU- -5'
33274 5' -49.2 NC_007605.1 + 2492 0.66 0.997944
Target:  5'- --aAGGGCCCUCU-GgaAGCCCg--- -3'
miRNA:   3'- auaUUCCGGGGGAaCaaUUGGGauuu -5'
33274 5' -49.2 NC_007605.1 + 154823 0.66 0.997944
Target:  5'- gAUGAGGCCggugaugcggaCCUUggUGUUGGCCCg--- -3'
miRNA:   3'- aUAUUCCGG-----------GGGA--ACAAUUGGGauuu -5'
33274 5' -49.2 NC_007605.1 + 34634 0.66 0.997944
Target:  5'- --aGGGGCCUCUUUGg--GCCCUc-- -3'
miRNA:   3'- auaUUCCGGGGGAACaauUGGGAuuu -5'
33274 5' -49.2 NC_007605.1 + 19289 0.66 0.997944
Target:  5'- --aGGGGCCUCUUUGg--GCCCUc-- -3'
miRNA:   3'- auaUUCCGGGGGAACaauUGGGAuuu -5'
33274 5' -49.2 NC_007605.1 + 25427 0.66 0.997944
Target:  5'- --aGGGGCCUCUUUGg--GCCCUc-- -3'
miRNA:   3'- auaUUCCGGGGGAACaauUGGGAuuu -5'
33274 5' -49.2 NC_007605.1 + 28496 0.66 0.997944
Target:  5'- --aGGGGCCUCUUUGg--GCCCUc-- -3'
miRNA:   3'- auaUUCCGGGGGAACaauUGGGAuuu -5'
33274 5' -49.2 NC_007605.1 + 31565 0.66 0.997944
Target:  5'- --aGGGGCCUCUUUGg--GCCCUc-- -3'
miRNA:   3'- auaUUCCGGGGGAACaauUGGGAuuu -5'
33274 5' -49.2 NC_007605.1 + 91498 0.66 0.997534
Target:  5'- ----cGGCCCCCgcagUAACCCc--- -3'
miRNA:   3'- auauuCCGGGGGaacaAUUGGGauuu -5'
33274 5' -49.2 NC_007605.1 + 168979 0.66 0.997534
Target:  5'- ----cGGCCCCCUcGagGACCCc--- -3'
miRNA:   3'- auauuCCGGGGGAaCaaUUGGGauuu -5'
33274 5' -49.2 NC_007605.1 + 163923 0.66 0.997534
Target:  5'- gGUcGGGCCUCCU-GUgcagAGCCUUGAc -3'
miRNA:   3'- aUAuUCCGGGGGAaCAa---UUGGGAUUu -5'
33274 5' -49.2 NC_007605.1 + 51351 0.66 0.99651
Target:  5'- ---cAGGCCCCCgauugaUGgcaaGGCCCUAu- -3'
miRNA:   3'- auauUCCGGGGGa-----ACaa--UUGGGAUuu -5'
33274 5' -49.2 NC_007605.1 + 6623 0.66 0.99645
Target:  5'- ----uGGCCCCCUcuuuuacccucucUGggAACCCg--- -3'
miRNA:   3'- auauuCCGGGGGA-------------ACaaUUGGGauuu -5'
33274 5' -49.2 NC_007605.1 + 161145 0.66 0.995879
Target:  5'- aUAUAAuGGCCUCCagGccAGCCCUGAu -3'
miRNA:   3'- -AUAUU-CCGGGGGaaCaaUUGGGAUUu -5'
33274 5' -49.2 NC_007605.1 + 111964 0.67 0.995158
Target:  5'- aAUAGGGCCCCUUUu---GCCCc--- -3'
miRNA:   3'- aUAUUCCGGGGGAAcaauUGGGauuu -5'
33274 5' -49.2 NC_007605.1 + 105540 0.67 0.995158
Target:  5'- --gGGGcGCCCCCgUGggAACgCCUGAu -3'
miRNA:   3'- auaUUC-CGGGGGaACaaUUG-GGAUUu -5'
33274 5' -49.2 NC_007605.1 + 88077 0.67 0.994337
Target:  5'- aUGUGAGGCCCCgCggcaGgaGGCCCa--- -3'
miRNA:   3'- -AUAUUCCGGGG-Gaa--CaaUUGGGauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.