miRNA display CGI


Results 1 - 20 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33276 3' -63.1 NC_007605.1 + 89759 0.66 0.672247
Target:  5'- aGGUcuGGCCGGUGGAUC-C-UCCACCg -3'
miRNA:   3'- -CCAccCCGGUCGCCUGGcGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 161949 0.66 0.672247
Target:  5'- --cGGGGCCAGCGcGGaggaGUACUCugACCu -3'
miRNA:   3'- ccaCCCCGGUCGC-CUgg--CGUGGG--UGG- -5'
33276 3' -63.1 NC_007605.1 + 137308 0.66 0.672247
Target:  5'- --cGGGGuCCAGaguucccGGCUGCuCCCGCCu -3'
miRNA:   3'- ccaCCCC-GGUCgc-----CUGGCGuGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 49007 0.66 0.672247
Target:  5'- cGGUGGcucaGCCAGCcucuGGCa--GCCCACCg -3'
miRNA:   3'- -CCACCc---CGGUCGc---CUGgcgUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 121582 0.66 0.671292
Target:  5'- -cUGGGGUcccgaagCAGCGucCCauugcgcugaGCGCCCACCu -3'
miRNA:   3'- ccACCCCG-------GUCGCcuGG----------CGUGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 141424 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 142545 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 142443 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 141322 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 141016 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 141729 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 141220 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 141118 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 142748 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 142137 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 141526 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 142647 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 142035 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 141628 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5'
33276 3' -63.1 NC_007605.1 + 141933 0.66 0.666515
Target:  5'- gGGUccGGGGUuccggcccuggagcuCGGgGGGCgGCcgggugGCCCACCg -3'
miRNA:   3'- -CCA--CCCCG---------------GUCgCCUGgCG------UGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.